Variant report

Variant	rs2663657
Chromosome Location	chr2:210526862-210526863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11693208	1.00[AMR][1000 genomes]
rs1355192	0.95[AFR][1000 genomes]
rs1355194	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs1509466	0.95[AFR][1000 genomes]
rs1509473	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1858141	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1976583	0.95[AFR][1000 genomes]
rs2366111	0.87[AFR][1000 genomes]
rs2710471	0.95[AFR][1000 genomes]
rs2710481	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710483	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710484	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288069	0.82[AFR][1000 genomes]
rs288074	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs288078	0.82[AFR][1000 genomes]
rs288082	0.82[AFR][1000 genomes]
rs288083	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs288086	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs288092	0.82[AFR][1000 genomes]
rs288093	0.82[AFR][1000 genomes]
rs6435532	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs6435534	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6744370	0.95[AFR][1000 genomes]
rs7568267	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs925263	1.00[AFR][1000 genomes]
rs985701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
2	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:210514000-210528000	Weak transcription	Ovary	ovary
4	chr2:210516400-210530200	Weak transcription	Pancreas	Pancrea
5	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
6	chr2:210525600-210528600	Active TSS	Fetal Brain Female	brain
7	chr2:210525800-210527000	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr2:210525800-210528600	Active TSS	Brain Anterior Caudate	brain
9	chr2:210525800-210528600	Active TSS	Brain Hippocampus Middle	brain
10	chr2:210525800-210528600	Enhancers	NH-A	brain
11	chr2:210526000-210527000	Active TSS	Brain Angular Gyrus	brain
12	chr2:210526000-210527200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210526000-210527200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr2:210526000-210527800	Active TSS	Brain Germinal Matrix	brain
15	chr2:210526000-210528000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:210526000-210528400	Active TSS	Brain Cingulate Gyrus	brain
17	chr2:210526000-210528800	Active TSS	Fetal Brain Male	brain
18	chr2:210526200-210527000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:210526200-210527200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr2:210526400-210527000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:210526400-210527800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:210526400-210527800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr2:210526400-210527800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr2:210526400-210527800	Weak transcription	Brain Substantia Nigra	brain
25	chr2:210526400-210528000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:210526400-210528000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:210526600-210527200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr2:210526600-210527400	Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr2:210526600-210527600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr2:210526600-210527800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:210526600-210527800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:210526600-210527800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:210526600-210527800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr2:210526600-210528000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:210526800-210527800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr2:210526800-210527800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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