Variant report

Variant	rs2710485
Chromosome Location	chr2:210523404-210523405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11693208	1.00[AMR][1000 genomes]
rs1355192	0.95[AFR][1000 genomes]
rs1355194	0.91[AFR][1000 genomes]
rs1509466	0.95[AFR][1000 genomes]
rs1509473	1.00[AFR][1000 genomes]
rs1858141	0.95[AFR][1000 genomes]
rs1976583	0.95[AFR][1000 genomes]
rs2366111	0.87[AFR][1000 genomes]
rs2663657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710471	0.95[AFR][1000 genomes]
rs2710481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288069	0.82[AFR][1000 genomes]
rs288074	0.82[AFR][1000 genomes]
rs288078	0.82[AFR][1000 genomes]
rs288082	0.82[AFR][1000 genomes]
rs288083	0.82[AFR][1000 genomes]
rs288086	0.82[AFR][1000 genomes]
rs288092	0.82[AFR][1000 genomes]
rs288093	0.82[AFR][1000 genomes]
rs6435532	0.95[AFR][1000 genomes]
rs6435534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6744370	0.95[AFR][1000 genomes]
rs7568267	0.95[AFR][1000 genomes]
rs925263	1.00[AFR][1000 genomes]
rs985701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210507800-210525800	Weak transcription	NH-A	brain
2	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
3	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:210513600-210525600	Weak transcription	Fetal Brain Male	brain
5	chr2:210514000-210528000	Weak transcription	Ovary	ovary
6	chr2:210516200-210525800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:210516400-210530200	Weak transcription	Pancreas	Pancrea
8	chr2:210516600-210525800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:210516600-210526000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:210516600-210526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:210518000-210526000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:210518200-210526000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210518200-210526000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
15	chr2:210518400-210524000	Weak transcription	Brain Germinal Matrix	brain
16	chr2:210519200-210525800	Weak transcription	Brain Anterior Caudate	brain
17	chr2:210519600-210523600	Weak transcription	Fetal Brain Female	brain
18	chr2:210520400-210523800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:210522200-210523600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:210522400-210525600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:210522400-210525800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:210522800-210523600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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