Variant report

Variant	rs1355194
Chromosome Location	chr2:210446086-210446087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178950	1.00[AMR][1000 genomes]
rs12694185	1.00[AMR][1000 genomes]
rs1355192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509466	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1858140	1.00[AMR][1000 genomes]
rs1858141	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976583	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366111	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs2663657	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs2710471	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710481	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs2710483	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs2710484	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs2710485	0.91[AFR][1000 genomes]
rs288069	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288074	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288078	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288082	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288083	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288086	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288092	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288093	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6435532	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6435534	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs6744370	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7568267	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925263	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443200-210446200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:210443400-210446600	Active TSS	Brain Angular Gyrus	brain
3	chr2:210443600-210448200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210443800-210446200	Active TSS	Brain Anterior Caudate	brain
6	chr2:210443800-210446200	Active TSS	Brain Hippocampus Middle	brain
7	chr2:210443800-210447200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:210443800-210447800	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr2:210444200-210447400	Active TSS	Fetal Brain Male	brain
10	chr2:210444400-210446200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210444400-210449200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:210444800-210456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:210445000-210446200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr2:210445400-210446600	Active TSS	Brain Cingulate Gyrus	brain
15	chr2:210445400-210449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:210445600-210446600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr2:210445800-210446400	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr2:210446000-210446200	Flanking Active TSS	Fetal Brain Female	brain
19	chr2:210446000-210446400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:210446000-210446800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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