Variant report

Variant	rs6435532
Chromosome Location	chr2:210449119-210449120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210443684..210445464-chr2:210448136..210450654,2	K562	blood:

Variant related genes	Relation type
ENSG00000078018	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178950	1.00[AMR][1000 genomes]
rs12694185	1.00[AMR][1000 genomes]
rs1355192	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1355194	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509466	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1858140	1.00[AMR][1000 genomes]
rs1858141	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1976583	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366111	0.85[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663657	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs2710471	0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710481	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs2710483	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs2710484	0.83[YRI][hapmap];0.95[AFR][1000 genomes]
rs2710485	0.95[AFR][1000 genomes]
rs288069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288074	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288078	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288082	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288083	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288086	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs288093	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6435534	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs6744370	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7568267	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210444400-210449200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:210444800-210456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:210445400-210449600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:210446200-210456800	Weak transcription	Brain Anterior Caudate	brain
6	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain
7	chr2:210446800-210449400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:210447800-210460400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:210448000-210449800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:210448200-210449600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210448400-210449200	Strong transcription	Brain Germinal Matrix	brain
12	chr2:210448600-210452000	Enhancers	Fetal Brain Male	brain
13	chr2:210448800-210449600	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:210448800-210450400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:210449000-210449600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:210449000-210449600	Enhancers	Fetal Brain Female	brain
17	chr2:210449000-210451200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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