Variant report

Variant	rs1598589
Chromosome Location	chr19:24565969-24565970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs71359986	0.81[AMR][1000 genomes]
rs71359988	0.80[AMR][1000 genomes]
rs71359997	1.00[AFR][1000 genomes]
rs8190039	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911472	chr19:23896204-24601680	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv579078	chr19:24209547-24631604	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1058057	chr19:24346067-24596738	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1059342	chr19:24348669-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1066250	chr19:24352103-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1058203	chr19:24354312-24596738	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1063458	chr19:24357581-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1055774	chr19:24367758-24596738	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1065127	chr19:24379090-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1064304	chr19:24380497-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1060045	chr19:24380806-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1061973	chr19:24383950-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1809858	chr19:24392064-24601177	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1813039	chr19:24402054-24582985	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1057292	chr19:24402242-24596738	Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1063583	chr19:24419363-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1065295	chr19:24420051-24596738	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv469593	chr19:24424843-24622723	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv482822	chr19:24424843-24622723	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv1065604	chr19:24427991-24596738	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv1059389	chr19:24430281-24596738	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv1066401	chr19:24436636-24596738	ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv1061144	chr19:24439471-24596738	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1060663	chr19:24451217-24596738	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv1055905	chr19:24454769-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv1059986	chr19:24456812-24596738	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1061462	chr19:24460806-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
28	nsv1062188	chr19:24461408-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
29	nsv1065328	chr19:24464086-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
30	nsv1062684	chr19:24464832-24596738	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
31	nsv579103	chr19:24468847-24569587	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
32	esv3337800	chr19:24474629-24603549	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
33	nsv911490	chr19:24482072-24610794	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
34	nsv579104	chr19:24487682-24574031	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
35	nsv1056576	chr19:24487682-24596738	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
36	esv1822484	chr19:24503760-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
37	nsv1060092	chr19:24503760-24596738	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
38	nsv1056577	chr19:24505050-24596738	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
39	nsv1061623	chr19:24505637-24596738	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
40	nsv1055501	chr19:24507112-24596738	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
41	nsv1065214	chr19:24521623-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
42	esv3347259	chr19:24525922-24603547	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
43	esv3329363	chr19:24526154-24605481	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
44	esv3397327	chr19:24526159-24572721	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
45	esv14008	chr19:24551540-24631644	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
46	esv1804227	chr19:24552161-24585183	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
47	esv1821945	chr19:24552161-24585183	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
48	esv1823538	chr19:24552161-24585183	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
49	esv1824384	chr19:24552161-24585183	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
50	esv1819027	chr19:24552161-24588295	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
3	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr19:24563000-24568800	ZNF genes & repeats	Psoas Muscle	Psoas
9	chr19:24563000-24569000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:24565200-24568200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr19:24565600-24566600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:24565800-24566800	Active TSS	Right Atrium	heart

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