Variant report
| Variant | rs16866942 |
|---|---|
| Chromosome Location | chr2:180582576-180582577 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10177883 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13407248 | 0.93[ASN][1000 genomes] |
| rs1515294 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866934 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs16866936 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16866943 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16866944 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16866945 | 0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17496658 | 0.88[EUR][1000 genomes] |
| rs17499149 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17499156 | 0.89[EUR][1000 genomes] |
| rs1964081 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2840142 | 0.88[EUR][1000 genomes] |
| rs56142641 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58143036 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs59431424 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs59642995 | 0.97[ASN][1000 genomes] |
| rs61200535 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73973703 | 0.91[EUR][1000 genomes] |
| rs746701 | 0.85[EUR][1000 genomes] |
| rs7582108 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7584651 | 1.00[ASN][1000 genomes] |
| rs7584968 | 1.00[ASN][1000 genomes] |
| rs881737 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:180582400-180585600 | Weak transcription | Right Atrium | heart |
