Variant report

Variant	rs16866944
Chromosome Location	chr2:180583294-180583295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10167236	0.85[YRI][hapmap]
rs10177883	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12052765	0.81[CEU][hapmap]
rs12053119	0.80[CEU][hapmap]
rs12465379	0.81[CEU][hapmap]
rs12467122	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs12473571	0.80[CEU][hapmap]
rs13407248	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13410494	0.85[YRI][hapmap]
rs1385972	0.81[CEU][hapmap]
rs1462208	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1515294	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866934	0.84[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16866936	0.80[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16866942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866943	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16866945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16866953	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap]
rs16866963	0.81[CEU][hapmap]
rs16866986	0.81[CEU][hapmap]
rs16866991	0.80[CEU][hapmap]
rs17496658	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs17499149	0.88[CHB][hapmap];0.96[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17499156	0.81[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1964081	0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2840142	0.90[EUR][1000 genomes]
rs56142641	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58143036	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59431424	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59642995	0.97[ASN][1000 genomes]
rs61200535	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73973703	0.89[EUR][1000 genomes]
rs746701	0.87[EUR][1000 genomes]
rs7559882	0.94[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7577307	0.81[CEU][hapmap]
rs7582108	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7584651	1.00[ASN][1000 genomes]
rs7584968	1.00[ASN][1000 genomes]
rs7592797	0.80[CEU][hapmap]
rs7607561	0.80[CEU][hapmap]
rs881737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs959954	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180582400-180585600	Weak transcription	Right Atrium	heart

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