Variant report

Variant	rs16888522
Chromosome Location	chr8:117573913-117573914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117570934..117572650-chr8:117572883..117574886,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16888486	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888508	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888589	1.00[ASN][1000 genomes]
rs16892766	1.00[ASN][1000 genomes]
rs56057462	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57606086	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679518	1.00[ASN][1000 genomes]
rs72679526	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679530	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679534	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679537	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679548	1.00[ASN][1000 genomes]
rs72679553	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679555	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679561	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679565	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679567	1.00[ASN][1000 genomes]
rs72679570	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679582	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679589	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679590	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117570800-117575400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:117571800-117574400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:117572400-117575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:117572600-117575000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:117572800-117574600	Weak transcription	Fetal Lung	lung
6	chr8:117573000-117574600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:117573000-117574800	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:117573000-117574800	Weak transcription	Fetal Stomach	stomach
9	chr8:117573000-117574800	Weak transcription	Ovary	ovary
10	chr8:117573000-117574800	Weak transcription	Right Atrium	heart
11	chr8:117573200-117574600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:117573200-117574600	Weak transcription	Adipose Nuclei	Adipose
13	chr8:117573200-117574800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:117573400-117574800	Weak transcription	Aorta	Aorta
15	chr8:117573800-117574000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:117573800-117574200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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