Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16888486	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888499	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888508	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888522	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888589	1.00[ASN][1000 genomes]
rs16892766	1.00[ASN][1000 genomes]
rs56057462	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57606086	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679518	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679526	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679530	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679534	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679537	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679548	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72679555	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679561	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679567	1.00[ASN][1000 genomes]
rs72679570	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679582	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679589	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679590	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679593	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679595	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527309	chr8:116888468-117563532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117506600-117513800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:117507000-117513800	Weak transcription	NHDF-Ad	bronchial

Quick Search: