Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117562786..117564718-chr8:117778178..117780245,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147677	Chromatin interaction
ENSG00000147679	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16888486	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888589	1.00[ASN][1000 genomes]
rs16892766	1.00[ASN][1000 genomes]
rs56057462	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57606086	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679518	1.00[ASN][1000 genomes]
rs72679526	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679530	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679534	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679537	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679548	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72679553	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679555	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679561	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679567	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72679570	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117546600-117566200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:117560200-117564400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:117560800-117564400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:117563800-117565000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:117563800-117565000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:117564000-117564400	Enhancers	Liver	Liver
7	chr8:117564000-117564600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:117564000-117564800	Enhancers	Fetal Stomach	stomach
9	chr8:117564000-117565000	Enhancers	Colon Smooth Muscle	Colon
10	chr8:117564000-117565000	Enhancers	Fetal Lung	lung
11	chr8:117564200-117564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:117564200-117564400	Active TSS	Osteobl	bone
13	chr8:117564200-117564600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:117564200-117564600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr8:117564200-117564800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr8:117564200-117565000	Enhancers	Fetal Muscle Leg	muscle
17	chr8:117564200-117565000	Enhancers	Ovary	ovary

Quick Search: