Variant report
| Variant | rs72679561 |
|---|---|
| Chromosome Location | chr8:117525523-117525524 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:117524023..117525935-chr8:117540679..117542190,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16888486 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16888499 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16888508 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16888522 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16888589 | 1.00[ASN][1000 genomes] |
| rs16892766 | 1.00[ASN][1000 genomes] |
| rs56057462 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57606086 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679518 | 1.00[ASN][1000 genomes] |
| rs72679526 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679530 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679534 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679537 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679548 | 1.00[ASN][1000 genomes] |
| rs72679553 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679555 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679565 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679567 | 1.00[ASN][1000 genomes] |
| rs72679570 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679582 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679589 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679590 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679593 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679595 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527309 | chr8:116888468-117563532 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:117523000-117528400 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr8:117524000-117526000 | Weak transcription | Osteobl | bone |
