Variant report
| Variant | rs72679518 |
|---|---|
| Chromosome Location | chr8:117476379-117476380 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000264875 | Chromatin interaction |
| ENSG00000164754 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs16888486 | 1.00[ASN][1000 genomes] |
| rs16888499 | 1.00[ASN][1000 genomes] |
| rs16888508 | 1.00[ASN][1000 genomes] |
| rs16888522 | 1.00[ASN][1000 genomes] |
| rs16888589 | 1.00[ASN][1000 genomes] |
| rs16892766 | 1.00[ASN][1000 genomes] |
| rs56057462 | 1.00[ASN][1000 genomes] |
| rs57606086 | 1.00[ASN][1000 genomes] |
| rs72679526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679530 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679534 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679548 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679553 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72679555 | 1.00[ASN][1000 genomes] |
| rs72679561 | 1.00[ASN][1000 genomes] |
| rs72679565 | 1.00[ASN][1000 genomes] |
| rs72679567 | 1.00[ASN][1000 genomes] |
| rs72679570 | 1.00[ASN][1000 genomes] |
| rs72679582 | 1.00[ASN][1000 genomes] |
| rs72679589 | 1.00[ASN][1000 genomes] |
| rs72679590 | 1.00[ASN][1000 genomes] |
| rs72679593 | 1.00[ASN][1000 genomes] |
| rs72679595 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527309 | chr8:116888468-117563532 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
