Variant report

Variant	rs72679537
Chromosome Location	chr8:117490871-117490872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117485405..117487236-chr8:117489306..117492128,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16888486	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888499	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888508	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888522	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888589	1.00[ASN][1000 genomes]
rs16892766	1.00[ASN][1000 genomes]
rs56057462	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57606086	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679534	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679548	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679553	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679555	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679561	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679565	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679567	1.00[ASN][1000 genomes]
rs72679570	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679582	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679589	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679590	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679593	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527309	chr8:116888468-117563532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117490200-117491600	Enhancers	Fetal Brain Male	brain
2	chr8:117490400-117491200	Enhancers	Fetal Brain Female	brain
3	chr8:117490600-117491000	Enhancers	Brain Hippocampus Middle	brain
4	chr8:117490600-117492000	Enhancers	Brain Germinal Matrix	brain
5	chr8:117490600-117492000	Enhancers	Fetal Lung	lung
6	chr8:117490800-117491000	Enhancers	Brain Substantia Nigra	brain
7	chr8:117490800-117491200	Enhancers	Cortex derived primary cultured neurospheres	brain

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