Variant report

Variant	rs16892766
Chromosome Location	chr8:117630683-117630684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11986063	0.86[AMR][1000 genomes]
rs16888486	1.00[ASN][1000 genomes]
rs16888499	1.00[ASN][1000 genomes]
rs16888508	1.00[ASN][1000 genomes]
rs16888522	1.00[ASN][1000 genomes]
rs16888589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56057462	1.00[ASN][1000 genomes]
rs57606086	1.00[ASN][1000 genomes]
rs72679518	1.00[ASN][1000 genomes]
rs72679526	1.00[ASN][1000 genomes]
rs72679530	1.00[ASN][1000 genomes]
rs72679534	1.00[ASN][1000 genomes]
rs72679537	1.00[ASN][1000 genomes]
rs72679548	1.00[ASN][1000 genomes]
rs72679553	1.00[ASN][1000 genomes]
rs72679555	1.00[ASN][1000 genomes]
rs72679561	1.00[ASN][1000 genomes]
rs72679565	1.00[ASN][1000 genomes]
rs72679567	1.00[ASN][1000 genomes]
rs72679570	1.00[ASN][1000 genomes]
rs72679582	1.00[ASN][1000 genomes]
rs72679589	1.00[ASN][1000 genomes]
rs72679590	1.00[ASN][1000 genomes]
rs72679593	1.00[ASN][1000 genomes]
rs72679595	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1815469	chr8:117622571-117633257	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv1821043	chr8:117622571-117633257	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv2757288	chr8:117623719-117645687	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv2759638	chr8:117623719-117645687	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv8378	chr8:117629367-117633191	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3479906	chr8:117630015-117633261	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv3479907	chr8:117630070-117633123	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	esv3479905	chr8:117630115-117633102	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	n/a
10	esv3479909	chr8:117630115-117633102	Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv824722	chr8:117630196-117632983	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv525169	chr8:117630683-117631964	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
13	nsv818653	chr8:117630683-117631964	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
14	esv1815431	chr8:117630683-117633032	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
15	esv1850961	chr8:117630683-117633032	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
16	esv1817738	chr8:117630683-117633257	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
17	esv1824102	chr8:117630683-117633257	Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
18	esv1843082	chr8:117630683-117633257	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	n/a
19	esv1844941	chr8:117630683-117633257	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
20	esv1851299	chr8:117630683-117633257	Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
21	esv2761464	chr8:117630683-117633257	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
22	esv1821769	chr8:117630683-117633261	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	n/a
23	esv1843113	chr8:117630683-117633261	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	n/a
24	nsv442119	chr8:117630683-117633261	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	n/a
25	nsv1016449	chr8:117630683-117644145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv1024038	chr8:117630683-117645687	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1020480	chr8:117630683-117652448	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

Variant related diseases (count:2)

Disease	PMID	Source
Colorectal cancer	21761138	GWAS catalog
Colorectal cancer	18372905	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117630400-117631000	Enhancers	Stomach Smooth Muscle	stomach
2	chr8:117630400-117631200	Enhancers	Fetal Lung	lung
3	chr8:117630400-117631400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:117630400-117631400	Enhancers	Fetal Stomach	stomach
5	chr8:117630600-117630800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:117630600-117631000	Weak transcription	Right Atrium	heart
7	chr8:117630600-117631200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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