Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16888486	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888499	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888508	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888522	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888589	1.00[ASN][1000 genomes]
rs16892766	1.00[ASN][1000 genomes]
rs56057462	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57606086	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679518	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679526	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679530	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679537	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679548	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679553	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679555	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679561	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679565	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679567	1.00[ASN][1000 genomes]
rs72679570	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679582	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679589	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679590	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679593	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72679595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527309	chr8:116888468-117563532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117485200-117490600	Weak transcription	Brain Germinal Matrix	brain
2	chr8:117485600-117490800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:117485800-117490600	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:117486000-117490000	Weak transcription	Brain Substantia Nigra	brain
5	chr8:117486000-117490400	Weak transcription	Fetal Brain Female	brain
6	chr8:117486200-117489600	Weak transcription	NHDF-Ad	bronchial
7	chr8:117486400-117490600	Weak transcription	Fetal Lung	lung
8	chr8:117487000-117488200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:117487000-117488200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:117487200-117488200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:117487200-117488400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:117487200-117488400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:117487200-117488400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:117487200-117488400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:117487200-117488800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:117487400-117488400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:117487600-117488400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr8:117487800-117488200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:117487800-117488200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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