Variant report

Variant	rs17062634
Chromosome Location	chr6:133821632-133821633
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11962716	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964752	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662135	0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12663242	1.00[ASN][1000 genomes]
rs12663243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664235	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062582	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062630	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1883388	0.82[EUR][1000 genomes]
rs2143012	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777868	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777871	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3777872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777874	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777878	0.82[EUR][1000 genomes]
rs3777879	0.82[AMR][1000 genomes]
rs3777880	0.82[AMR][1000 genomes]
rs3777883	0.82[AMR][1000 genomes]
rs3777885	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3822936	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56655335	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58073338	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342392	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60226395	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61276340	0.89[ASN][1000 genomes]
rs6899314	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905892	1.00[ASN][1000 genomes]
rs6921578	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544957	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544971	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544998	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544999	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546821	0.82[EUR][1000 genomes]
rs7773315	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
3	chr6:133808600-133822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133818400-133828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133819200-133822000	Weak transcription	Fetal Kidney	kidney
6	chr6:133819800-133824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:133820400-133821800	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:133820400-133822000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133820600-133823600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:133820800-133824200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:133821400-133821800	Weak transcription	Adipose Nuclei	Adipose
12	chr6:133821400-133823800	Weak transcription	Right Atrium	heart
13	chr6:133821400-133824800	Enhancers	Hela-S3	cervix
14	chr6:133821600-133824400	Enhancers	Ovary	ovary
15	chr6:133821600-133824800	Enhancers	Skeletal Muscle Female	skeletal muscle

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