Variant report

Variant	rs3822936
Chromosome Location	chr6:133805308-133805309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11962716	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964752	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662135	0.98[ASN][1000 genomes]
rs12663242	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12663243	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664235	1.00[ASN][1000 genomes]
rs17062582	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062630	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17062634	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883388	1.00[EUR][1000 genomes]
rs2143012	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179341	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777868	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777869	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777871	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777872	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777874	0.82[EUR][1000 genomes]
rs3777878	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777879	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3777880	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3777883	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3777884	0.82[EUR][1000 genomes]
rs3777885	0.97[ASN][1000 genomes]
rs3886686	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56655335	0.82[EUR][1000 genomes]
rs58073338	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60226395	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61276340	0.89[ASN][1000 genomes]
rs6899314	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900743	0.87[AFR][1000 genomes]
rs6905892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6921578	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942295	1.00[AFR][1000 genomes]
rs73544957	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544989	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544998	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544999	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546803	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750265	1.00[AFR][1000 genomes]
rs7765616	0.84[AFR][1000 genomes]
rs7773315	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133782000-133811600	Weak transcription	A549	lung
3	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
5	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
6	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
8	chr6:133790800-133807800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133795000-133808400	Weak transcription	Left Ventricle	heart
11	chr6:133801800-133805400	Weak transcription	Hela-S3	cervix
12	chr6:133802800-133807400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:133803200-133809600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133804600-133807800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:133804600-133808600	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:133805200-133806600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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