Variant report

Variant	rs3777869
Chromosome Location	chr6:133817941-133817942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133816775..133819031-chr6:133829818..133833143,3	K562	blood:

Variant related genes	Relation type
ENSG00000238059	Chromatin interaction
ENSG00000227954	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11962716	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11964752	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12662135	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12663242	1.00[ASN][1000 genomes]
rs12663243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17062582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062630	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17062634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883388	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2143012	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777871	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3777872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777873	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3777874	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3777878	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs3777879	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs3777880	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs3777883	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs3777884	0.82[JPT][hapmap]
rs3777885	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3822936	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56655335	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58073338	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342392	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60226395	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61276340	0.89[ASN][1000 genomes]
rs6899314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6921578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544957	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544971	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544998	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544999	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546821	0.82[EUR][1000 genomes]
rs7773315	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
3	chr6:133790800-133821600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:133808600-133822000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133810200-133820800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133810200-133821400	Weak transcription	Hela-S3	cervix
7	chr6:133812200-133820400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:133816800-133818800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:133817600-133818400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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