Variant report

Variant	rs73546821
Chromosome Location	chr6:133822075-133822076
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11962716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11964752	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663242	0.91[AMR][1000 genomes]
rs12663243	0.82[EUR][1000 genomes]
rs17062582	0.82[EUR][1000 genomes]
rs17062630	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17062634	0.82[EUR][1000 genomes]
rs1883388	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143012	0.82[EUR][1000 genomes]
rs2179341	0.82[EUR][1000 genomes]
rs3777868	0.82[EUR][1000 genomes]
rs3777869	0.82[EUR][1000 genomes]
rs3777871	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777872	0.82[EUR][1000 genomes]
rs3777874	0.82[EUR][1000 genomes]
rs3777878	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777879	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777880	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777883	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3777884	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822936	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3886686	0.82[EUR][1000 genomes]
rs56655335	0.82[EUR][1000 genomes]
rs58073338	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59342392	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60226395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899314	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6905892	0.87[AMR][1000 genomes]
rs6921578	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544957	0.82[EUR][1000 genomes]
rs73544971	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544989	0.82[EUR][1000 genomes]
rs73544998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544999	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546803	0.82[EUR][1000 genomes]
rs7773315	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
2	chr6:133818400-133828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:133819800-133824000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:133820600-133823600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:133820800-133824200	Enhancers	Fetal Muscle Leg	muscle
6	chr6:133821400-133823800	Weak transcription	Right Atrium	heart
7	chr6:133821400-133824800	Enhancers	Hela-S3	cervix
8	chr6:133821600-133824400	Enhancers	Ovary	ovary
9	chr6:133821600-133824800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:133821800-133822200	Enhancers	Left Ventricle	heart
11	chr6:133821800-133826600	Enhancers	Adipose Nuclei	Adipose
12	chr6:133821800-133835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133822000-133822200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:133822000-133822200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:133822000-133822400	Enhancers	Psoas Muscle	Psoas
16	chr6:133822000-133822600	Enhancers	Fetal Kidney	kidney
17	chr6:133822000-133823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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