Variant report

Variant	rs73544957
Chromosome Location	chr6:133790516-133790517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11962716	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11964752	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12662135	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12663242	0.99[ASN][1000 genomes]
rs12663243	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12664235	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17062582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062630	0.82[EUR][1000 genomes]
rs17062634	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883388	0.82[EUR][1000 genomes]
rs2143012	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2179341	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777868	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777869	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777871	0.82[EUR][1000 genomes]
rs3777872	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777874	1.00[EUR][1000 genomes]
rs3777878	0.82[EUR][1000 genomes]
rs3777885	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3822936	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886686	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56655335	1.00[EUR][1000 genomes]
rs58073338	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59342392	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226395	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61276340	0.88[ASN][1000 genomes]
rs6899314	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6905892	0.99[ASN][1000 genomes]
rs6921578	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544971	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544989	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73544998	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73544999	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73546803	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73546821	0.82[EUR][1000 genomes]
rs7773315	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133765800-133822000	Weak transcription	Psoas Muscle	Psoas
2	chr6:133780800-133796800	Weak transcription	NHLF	lung
3	chr6:133782000-133811600	Weak transcription	A549	lung
4	chr6:133782400-133806400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:133784000-133813000	Weak transcription	HSMMtube	muscle
6	chr6:133786600-133812400	Weak transcription	Fetal Kidney	kidney
7	chr6:133786800-133807400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:133787400-133822800	Weak transcription	Fetal Lung	lung
9	chr6:133789000-133790800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:133789200-133790800	Strong transcription	Hela-S3	cervix
11	chr6:133789600-133790800	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:133789800-133791400	Weak transcription	NH-A	brain
13	chr6:133790000-133791000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:133790200-133796800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133790400-133790800	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:133790400-133791000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:133790400-133794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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