Variant report

Variant	rs17513468
Chromosome Location	chr2:99235169-99235170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99233497..99236198-chr2:99236599..99238658,2	MCF-7	breast:

Extended variants
information (count: 171 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs10199199	0.81[EUR][1000 genomes]
rs10496327	0.85[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs10514774	0.81[EUR][1000 genomes]
rs1139829	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11537554	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11884553	0.93[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11888595	0.86[EUR][1000 genomes]
rs11892744	0.85[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11896729	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11901568	0.87[EUR][1000 genomes]
rs11902825	0.87[EUR][1000 genomes]
rs12052639	0.87[EUR][1000 genomes]
rs12617721	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12618524	0.92[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs12618769	0.91[YRI][hapmap]
rs12619665	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12622341	0.86[EUR][1000 genomes]
rs13402379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1516085	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1587835	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes]
rs17031139	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17031146	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17031905	0.86[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17032120	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17032866	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17032870	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17033136	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17033813	0.95[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17034171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17034241	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17444095	0.86[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs17446058	0.90[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17502889	0.81[EUR][1000 genomes]
rs17504774	0.86[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs17505088	0.86[EUR][1000 genomes]
rs17505326	0.90[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17506535	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1847550	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2230388	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276603	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2278206	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2278207	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2278208	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2278211	0.82[EUR][1000 genomes]
rs2278212	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2278213	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2278214	0.86[CEU][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs2309390	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3203856	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34906456	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3729568	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754871	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3754872	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.89[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3754875	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3754877	0.95[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3754878	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754879	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3754880	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3754881	0.86[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3754883	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3754884	0.87[EUR][1000 genomes]
rs3754885	0.87[EUR][1000 genomes]
rs3754886	0.85[EUR][1000 genomes]
rs3754888	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3754889	0.85[EUR][1000 genomes]
rs3754890	0.87[EUR][1000 genomes]
rs3754891	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3754892	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs3754893	0.83[EUR][1000 genomes]
rs3769697	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs3769698	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3769701	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3769708	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769709	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3769712	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3769713	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769715	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs3769716	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs3769717	0.87[EUR][1000 genomes]
rs3769719	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769723	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769724	0.87[EUR][1000 genomes]
rs3769725	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769726	0.87[EUR][1000 genomes]
rs3769727	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769728	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs3769729	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769730	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3769733	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3769734	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3769735	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3769736	0.87[EUR][1000 genomes]
rs3769737	0.86[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs3769738	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3769740	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3769741	0.86[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3769743	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3820941	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3820943	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs3820945	0.87[EUR][1000 genomes]
rs4596026	0.88[EUR][1000 genomes]
rs4599165	0.87[EUR][1000 genomes]
rs4850874	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4850875	0.85[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes]
rs4850876	0.87[EUR][1000 genomes]
rs4850877	0.87[EUR][1000 genomes]
rs4850878	0.87[EUR][1000 genomes]
rs4850879	0.87[EUR][1000 genomes]
rs4851131	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4851136	0.86[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.84[EUR][1000 genomes]
rs4851138	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4851140	0.87[EUR][1000 genomes]
rs4851141	0.86[EUR][1000 genomes]
rs4851142	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4851144	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4851145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4851146	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55900716	0.87[EUR][1000 genomes]
rs55934321	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56091613	0.87[EUR][1000 genomes]
rs56118505	0.84[EUR][1000 genomes]
rs56141907	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56197140	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56232707	0.81[EUR][1000 genomes]
rs56240302	0.87[EUR][1000 genomes]
rs56333112	0.81[EUR][1000 genomes]
rs56357378	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58778964	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61180742	0.87[EUR][1000 genomes]
rs6542754	0.82[AMR][1000 genomes]
rs6728891	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6736755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6753380	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6753515	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72819965	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72819970	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72819971	0.82[EUR][1000 genomes]
rs72819972	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72819981	0.82[EUR][1000 genomes]
rs72819996	0.84[EUR][1000 genomes]
rs72820002	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72821904	0.87[EUR][1000 genomes]
rs72821907	0.87[EUR][1000 genomes]
rs72821908	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72821920	0.87[EUR][1000 genomes]
rs72821924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72821930	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72821939	0.87[EUR][1000 genomes]
rs72821943	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72821946	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72821951	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72821955	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72821956	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72821965	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72823788	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72823792	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72823794	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72823796	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72823801	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72825710	0.81[AFR][1000 genomes]
rs72825711	0.81[AFR][1000 genomes]
rs7560357	0.82[YRI][hapmap]
rs7562232	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7585747	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7585939	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7588254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7593615	0.82[EUR][1000 genomes]
rs7595120	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs961242	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013941	chr2:99116255-99317933	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv535834	chr2:99116255-99317933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17513468	UNC50	cis	lymphoblastoid	seeQTL
rs17513468	INPP4A	cis	lymphoblastoid	seeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99226600-99235800	Strong transcription	HSMM	muscle
2	chr2:99226800-99235200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:99226800-99235400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:99226800-99235600	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:99226800-99238600	Strong transcription	Primary B cells from cord blood	blood
6	chr2:99227000-99239000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:99227200-99235400	Strong transcription	NH-A	brain
8	chr2:99227200-99236000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr2:99227200-99236000	Strong transcription	Placenta	Placenta
10	chr2:99227200-99257400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr2:99227400-99235200	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:99227400-99235400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:99227400-99235400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:99227400-99235600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:99227400-99235600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:99227400-99235800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:99227600-99235200	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr2:99227600-99235200	Strong transcription	Osteobl	bone
19	chr2:99227600-99243200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr2:99227800-99239400	Strong transcription	HUVEC	blood vessel
21	chr2:99227800-99240200	Strong transcription	Fetal Thymus	thymus
22	chr2:99228000-99235400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:99228000-99235600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:99228000-99236000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:99228000-99236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:99228000-99236000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:99228000-99236000	Strong transcription	Liver	Liver
28	chr2:99228000-99236400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:99228000-99238200	Strong transcription	Adipose Nuclei	Adipose
30	chr2:99228000-99239000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr2:99228000-99240000	Strong transcription	Dnd41	blood
32	chr2:99228000-99240400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr2:99228000-99241200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr2:99228200-99235600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:99228200-99240400	Strong transcription	Fetal Intestine Large	intestine
36	chr2:99228200-99244600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr2:99228800-99235400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr2:99229000-99235600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:99229000-99240800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr2:99229400-99238600	Strong transcription	Brain Cingulate Gyrus	brain
41	chr2:99229400-99242400	Strong transcription	HepG2	liver
42	chr2:99229800-99237600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:99230200-99250600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:99230400-99236000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr2:99230800-99235400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr2:99230800-99237600	Weak transcription	Colonic Mucosa	Colon
47	chr2:99231000-99237200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:99231200-99235200	Strong transcription	NHDF-Ad	bronchial
49	chr2:99231200-99237400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:99231200-99237600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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