The 2.0 version of rSNPBase

Variant report

Variant rs55900716
Chromosome Location chr2:99109132-99109133
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:99072600-99119600 Weak transcription Aorta Aorta
2 chr2:99096800-99113600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:99097400-99110400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr2:99098400-99115200 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr2:99100000-99111000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr2:99100200-99110400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr2:99100400-99121600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr2:99100600-99110600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr2:99101000-99115200 Weak transcription Fetal Lung lung
10 chr2:99101600-99111200 Weak transcription Fetal Brain Female brain
11 chr2:99101600-99121200 Weak transcription Gastric stomach
12 chr2:99101600-99131400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr2:99102200-99122200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr2:99103200-99113200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr2:99103400-99110000 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr2:99103400-99115200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr2:99103600-99113400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr2:99103600-99118400 Weak transcription HSMMtube muscle
19 chr2:99104000-99109200 Enhancers Skeletal Muscle Male skeletal muscle
20 chr2:99104000-99118400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr2:99104400-99110600 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr2:99104600-99110600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr2:99105000-99110600 Weak transcription H1 Cell Line embryonic stem cell
24 chr2:99105000-99110600 Weak transcription iPS-15b Cell Line embryonic stem cell
25 chr2:99105000-99110600 Weak transcription K562 blood
26 chr2:99105200-99110800 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr2:99105200-99120400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr2:99105400-99110600 Weak transcription Fetal Intestine Small intestine
29 chr2:99105400-99110600 Weak transcription Fetal Muscle Leg muscle
30 chr2:99105600-99110600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr2:99105800-99109800 Enhancers Right Ventricle heart
32 chr2:99105800-99110400 Weak transcription Primary B cells from peripheral blood blood
33 chr2:99106000-99109200 Enhancers Stomach Smooth Muscle stomach
34 chr2:99106000-99110600 Weak transcription HepG2 liver
35 chr2:99106000-99111400 Weak transcription Fetal Intestine Large intestine
36 chr2:99106000-99115200 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr2:99106600-99111600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
38 chr2:99106800-99109800 Genic enhancers Primary T helper cells PMA-I stimulated --
39 chr2:99106800-99110000 Genic enhancers Primary T helper cells fromperipheralblood blood
40 chr2:99106800-99111200 Genic enhancers Primary T cells fromperipheralblood blood
41 chr2:99106800-99119600 Weak transcription Primary neutrophils fromperipheralblood blood
42 chr2:99106800-99119800 Weak transcription Pancreas Pancrea
43 chr2:99107000-99109200 Weak transcription Duodenum Mucosa Duodenum
44 chr2:99107000-99109200 Weak transcription Spleen Spleen
45 chr2:99107000-99109600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
46 chr2:99107000-99111000 Strong transcription Monocytes-CD14+_RO01746 blood
47 chr2:99107000-99115000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr2:99107200-99109400 Strong transcription Primary T regulatory cells fromperipheralblood blood
49 chr2:99107200-99111400 Weak transcription Rectal Smooth Muscle rectum
50 chr2:99107600-99109400 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015