Variant report

Variant	rs1765275
Chromosome Location	chr1:155873960-155873961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155862010..155864371-chr1:155873312..155876072,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201614	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1010033	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs1018730	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1055184	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10908485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11264421	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12039053	0.97[EUR][1000 genomes]
rs12138833	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs12747344	0.85[CEU][hapmap];0.99[EUR][1000 genomes]
rs1544119	0.85[CEU][hapmap]
rs1749407	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1749408	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1749409	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1964951	0.96[EUR][1000 genomes]
rs2275079	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2275081	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2364402	0.97[EUR][1000 genomes]
rs2364404	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs28379575	0.96[EUR][1000 genomes]
rs2886069	0.97[EUR][1000 genomes]
rs34802187	0.99[EUR][1000 genomes]
rs35138477	0.82[EUR][1000 genomes]
rs35374730	0.99[EUR][1000 genomes]
rs35588936	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs35730001	0.96[EUR][1000 genomes]
rs3768280	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4412586	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4661160	0.97[EUR][1000 genomes]
rs4661162	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs4661170	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4661172	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs493446	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs506688	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs527113	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs536870	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs572609	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs605025	0.85[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6660802	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6667096	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs708614	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71628697	1.00[EUR][1000 genomes]
rs71628699	0.84[EUR][1000 genomes]
rs822502	0.91[EUR][1000 genomes]
rs822503	0.97[EUR][1000 genomes]
rs822506	0.81[AFR][1000 genomes]
rs822519	0.82[CEU][hapmap]
rs822653	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155844400-155874000	Weak transcription	Fetal Brain Male	brain
2	chr1:155863400-155880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155863800-155874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:155865000-155875400	Strong transcription	Fetal Brain Female	brain
5	chr1:155865200-155878600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:155865200-155879200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr1:155865200-155879600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:155865600-155879200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:155865600-155879600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:155865800-155878400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr1:155865800-155878800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:155865800-155879200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:155865800-155879400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:155865800-155879800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:155865800-155880000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:155866000-155879000	Strong transcription	Liver	Liver
17	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:155866000-155879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:155866000-155879200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:155866000-155879600	Strong transcription	Primary B cells from peripheral blood	blood
21	chr1:155866000-155879600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr1:155866000-155879600	Strong transcription	Fetal Intestine Large	intestine
23	chr1:155866000-155879800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:155866000-155879800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:155866000-155879800	Strong transcription	Fetal Thymus	thymus
26	chr1:155866200-155875400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr1:155866200-155879000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:155866200-155879000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr1:155866200-155879800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:155866400-155875400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr1:155866400-155877600	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr1:155866400-155878000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:155866400-155879200	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr1:155866400-155879600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:155866400-155879800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:155866600-155875400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:155866600-155878400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:155866800-155879000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr1:155867400-155878600	Strong transcription	Dnd41	blood
40	chr1:155867400-155879800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:155867400-155879800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:155867400-155880000	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr1:155868400-155875200	Strong transcription	Brain Germinal Matrix	brain
44	chr1:155868400-155877600	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr1:155868400-155879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr1:155868600-155875400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:155868600-155879200	Strong transcription	Adipose Nuclei	Adipose
48	chr1:155868600-155879400	Strong transcription	Stomach Smooth Muscle	stomach
49	chr1:155868800-155875000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:155868800-155875200	Strong transcription	Spleen	Spleen

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