Variant report

Variant	rs17836184
Chromosome Location	chr14:69782923-69782924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69782256..69784527-chr14:69788107..69790560,2	MCF-7	breast:
2	chr14:69780441..69783406-chr14:69787720..69789351,2	MCF-7	breast:
3	chr14:69728770..69731515-chr14:69782334..69785257,2	MCF-7	breast:
4	chr14:69781606..69784523-chr14:69813636..69815679,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11620883	1.00[CEU][hapmap]
rs11621144	0.82[EUR][1000 genomes]
rs11621833	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625909	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626985	1.00[CEU][hapmap]
rs11627004	0.87[CEU][hapmap]
rs11627202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11627476	0.87[CEU][hapmap]
rs17836176	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176255	0.87[CEU][hapmap]
rs3742905	0.87[CEU][hapmap]
rs4389087	1.00[CEU][hapmap]
rs55877231	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56017572	0.80[EUR][1000 genomes]
rs7144704	0.87[CEU][hapmap]
rs72722143	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72722162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008141	0.87[CEU][hapmap]
rs867402	1.00[YRI][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69777600-69783200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69779000-69786200	Enhancers	Left Ventricle	heart
3	chr14:69779800-69783200	Weak transcription	Right Atrium	heart
4	chr14:69780200-69783200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:69780200-69792600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:69780400-69783200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:69780400-69792600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:69780800-69783600	Weak transcription	Osteobl	bone
9	chr14:69781200-69783200	Weak transcription	Ovary	ovary
10	chr14:69781400-69783000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:69781400-69783200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:69781400-69783200	Weak transcription	Right Ventricle	heart
13	chr14:69781400-69783600	Enhancers	A549	lung
14	chr14:69781600-69784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:69781600-69794800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:69781800-69784200	Enhancers	NHDF-Ad	bronchial
17	chr14:69781800-69785800	Enhancers	NHLF	lung
18	chr14:69782000-69783600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:69782000-69785000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:69782000-69785000	Enhancers	HSMMtube	muscle
21	chr14:69782000-69785400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:69782200-69786000	Enhancers	Spleen	Spleen
23	chr14:69782200-69788000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:69782400-69783200	Weak transcription	Fetal Intestine Small	intestine
25	chr14:69782400-69783200	Weak transcription	Fetal Muscle Leg	muscle
26	chr14:69782400-69783600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:69782400-69783600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:69782400-69783600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr14:69782400-69783600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr14:69782400-69783600	Weak transcription	HSMM	muscle
31	chr14:69782400-69784000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:69782400-69788400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:69782400-69790200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:69782400-69790400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:69782600-69783000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:69782800-69783000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
37	chr14:69782800-69784000	Weak transcription	Brain Anterior Caudate	brain
38	chr14:69782800-69784000	Weak transcription	HMEC	breast
39	chr14:69782800-69786000	Enhancers	Skeletal Muscle Female	skeletal muscle

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