Variant report

Variant rs2140270
Chromosome Location chr3:49439440-49439441
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49399000-49448000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr3:49406000-49445200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr3:49413200-49441400 Weak transcription Aorta Aorta
4 chr3:49413200-49443000 Weak transcription Brain Cingulate Gyrus brain
5 chr3:49413200-49447400 Weak transcription H9 Cell Line embryonic stem cell
6 chr3:49413600-49441000 Weak transcription Fetal Brain Female brain
7 chr3:49422200-49443000 Weak transcription Rectal Smooth Muscle rectum
8 chr3:49424200-49443400 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr3:49426000-49444000 Weak transcription Esophagus oesophagus
10 chr3:49426200-49443000 Weak transcription NHLF lung
11 chr3:49427000-49448400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr3:49429000-49441800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr3:49429000-49447200 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr3:49431200-49447200 Weak transcription H1 Cell Line embryonic stem cell
15 chr3:49431800-49439600 Genic enhancers Primary B cells from peripheral blood blood
16 chr3:49433800-49444000 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr3:49433800-49447200 Weak transcription Colonic Mucosa Colon
18 chr3:49434200-49440800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr3:49434200-49442800 Weak transcription Brain Germinal Matrix brain
20 chr3:49434600-49440000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr3:49434800-49441000 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr3:49434800-49443000 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr3:49435400-49441200 Weak transcription Stomach Mucosa stomach
24 chr3:49435400-49442400 Strong transcription Fetal Intestine Small intestine
25 chr3:49435400-49445600 Weak transcription Fetal Brain Male brain
26 chr3:49435400-49447000 Weak transcription HSMMtube muscle
27 chr3:49435400-49447800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr3:49435600-49439600 Weak transcription HUVEC blood vessel
29 chr3:49435600-49443000 Weak transcription NHDF-Ad bronchial
30 chr3:49435600-49443200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr3:49435800-49439800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr3:49435800-49443000 Weak transcription Small Intestine intestine
33 chr3:49435800-49446800 Weak transcription Brain Angular Gyrus brain
34 chr3:49436000-49440400 Enhancers Primary T cells fromperipheralblood blood
35 chr3:49436600-49443200 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
36 chr3:49436800-49439600 Genic enhancers GM12878-XiMat blood
37 chr3:49436800-49441800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr3:49437000-49440200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
39 chr3:49437000-49441400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
40 chr3:49437400-49439600 Strong transcription Muscle Satellite Cultured Cells --
41 chr3:49437600-49440800 Enhancers Primary T killer naive cells fromperipheralblood blood
42 chr3:49437600-49441800 Strong transcription Thymus Thymus
43 chr3:49437800-49439800 Enhancers Psoas Muscle Psoas
44 chr3:49437800-49439800 Enhancers Skeletal Muscle Male skeletal muscle
45 chr3:49437800-49440400 Genic enhancers Primary T regulatory cells fromperipheralblood blood
46 chr3:49437800-49441400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr3:49438000-49441200 Strong transcription Dnd41 blood
48 chr3:49438000-49441600 Genic enhancers Primary T helper cells fromperipheralblood blood
49 chr3:49438000-49441600 Strong transcription Placenta Amnion Placenta Amnion
50 chr3:49438000-49442000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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