Variant report

Variant	rs8897
Chromosome Location	chr3:49460407-49460408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:59)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:59 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:49460069-49460547	HepG2	liver:	n/a	n/a
2	MAFF	chr3:49460027-49460569	HepG2	liver:	n/a	n/a
3	CREB1	chr3:49459343-49460703	HepG2	liver:	n/a	n/a
4	RXRA	chr3:49460006-49460501	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:49460206-49460490	H1-hESC	embryonic stem cell:	n/a	n/a
6	NFIC	chr3:49459378-49460624	HepG2	liver:	n/a	n/a
7	MAX	chr3:49459721-49460599	HepG2	liver:	n/a	n/a
8	HNF4G	chr3:49459786-49460538	HepG2	liver:	n/a	chr3:49460189-49460204
9	TBP	chr3:49459835-49460593	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:49459863-49460628	HepG2	liver:	n/a	n/a
11	EP300	chr3:49459694-49460595	HepG2	liver:	n/a	n/a
12	POLR2A	chr3:49459406-49460557	HepG2	liver:	n/a	n/a
13	MAFK	chr3:49459996-49460602	HepG2	liver:	n/a	n/a
14	CREB1	chr3:49459137-49460736	HepG2	liver:	n/a	n/a
15	HEY1	chr3:49459452-49460491	HepG2	liver:	n/a	n/a
16	MYBL2	chr3:49459629-49460689	HepG2	liver:	n/a	n/a
17	JUND	chr3:49459792-49460436	HepG2	liver:	n/a	n/a
18	MYBL2	chr3:49459239-49460787	HepG2	liver:	n/a	n/a
19	MAFK	chr3:49460049-49460612	HepG2	liver:	n/a	n/a
20	POLR2A	chr3:49460095-49460434	K562	blood:	n/a	n/a
21	HDAC2	chr3:49459733-49460543	HepG2	liver:	n/a	n/a
22	HNF4A	chr3:49459499-49460501	HepG2	liver:	n/a	chr3:49460190-49460205
23	POLR2A	chr3:49459614-49460788	HepG2	liver:	n/a	n/a
24	REST	chr3:49459717-49460457	HepG2	liver:	n/a	n/a
25	HNF4A	chr3:49459946-49460503	HepG2	liver:	n/a	chr3:49460190-49460205
26	POLR2A	chr3:49459147-49460689	HepG2	liver:	n/a	n/a
27	NFIC	chr3:49459713-49460636	HepG2	liver:	n/a	n/a
28	POLR2A	chr3:49459113-49460638	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr3:49459682-49460594	HepG2	liver:	n/a	n/a
30	MAX	chr3:49459006-49460693	HepG2	liver:	n/a	n/a
31	RFX5	chr3:49459566-49460532	HepG2	liver:	n/a	n/a
32	ZNF143	chr3:49459469-49460494	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr3:49459304-49460829	HepG2	liver:	n/a	n/a
34	POLR2A	chr3:49459643-49460436	HepG2	liver:	n/a	n/a
35	USF2	chr3:49460323-49460449	HepG2	liver:	n/a	n/a
36	RAD21	chr3:49459949-49460590	HepG2	liver:	n/a	n/a
37	EP300	chr3:49459640-49460685	HepG2	liver:	n/a	n/a
38	POLR2A	chr3:49456096-49460980	HepG2	liver:	n/a	n/a
39	FOXA2	chr3:49460072-49460547	HepG2	liver:	n/a	n/a
40	HEY1	chr3:49459400-49460682	HepG2	liver:	n/a	n/a
41	POLR2A	chr3:49459211-49460593	H1-hESC	embryonic stem cell:	n/a	n/a
42	TEAD4	chr3:49460216-49460603	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr3:49460385-49460570	Hela-S3	cervix:	n/a	n/a
44	YY1	chr3:49459369-49460498	HepG2	liver:	n/a	n/a
45	POLR2A	chr3:49460290-49460519	HCT-116	colon:	n/a	n/a
46	TEAD4	chr3:49460227-49460573	HepG2	liver:	n/a	n/a
47	SP1	chr3:49459756-49460554	HepG2	liver:	n/a	n/a
48	RCOR1	chr3:49459351-49460593	HepG2	liver:	n/a	n/a
49	HNF4A	chr3:49459805-49460485	HepG2	liver:	n/a	chr3:49460190-49460205
50	TEAD4	chr3:49459723-49460623	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49460325..49461920-chr3:49506460..49509220,2	MCF-7	breast:
2	chr3:49375139..49377482-chr3:49460180..49462859,2	MCF-7	breast:
3	chr3:49457686..49462880-chr3:49464384..49468098,7	MCF-7	breast:
4	chr3:49377853..49379731-chr3:49460064..49462187,2	K562	blood:
5	chr3:49448910..49451821-chr3:49459047..49464749,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCTA-1	chr3:49460379-49460958	ENSG00000235261.1

No data

Variant related genes	Relation type
AMT	TF binding region
ENSG00000145029	Chromatin interaction
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction
ENSG00000114316	Chromatin interaction
ENSG00000173402	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1009051	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10154992	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10155014	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10452032	1.00[ASN][1000 genomes]
rs1078341	1.00[ASN][1000 genomes]
rs10865956	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106620	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11130183	1.00[ASN][1000 genomes]
rs11130186	0.91[CEU][hapmap];1.00[ASN][1000 genomes]
rs11130187	1.00[ASN][1000 genomes]
rs11130190	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130207	1.00[ASN][1000 genomes]
rs11130208	0.91[ASW][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];1.00[ASN][1000 genomes]
rs11130217	1.00[ASN][1000 genomes]
rs11709734	1.00[ASN][1000 genomes]
rs11710434	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715060	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11719762	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11720542	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720657	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923032	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11928090	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12583	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637313	1.00[CHD][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs12715437	1.00[ASN][1000 genomes]
rs13084037	1.00[ASN][1000 genomes]
rs13096474	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13096480	0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs13322887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352889	1.00[CHD][hapmap]
rs1463728	1.00[ASN][1000 genomes]
rs1464569	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1491983	0.82[ASW][hapmap];1.00[CHD][hapmap]
rs1491985	1.00[ASN][1000 genomes]
rs1532204	1.00[ASN][1000 genomes]
rs1586827	1.00[ASN][1000 genomes]
rs1982861	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes]
rs2029591	0.91[ASW][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];0.80[MKK][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs2082923	1.00[ASN][1000 genomes]
rs2099526	1.00[ASN][1000 genomes]
rs2131108	1.00[ASN][1000 genomes]
rs2140270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes]
rs2329021	1.00[ASN][1000 genomes]
rs2329025	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3020779	1.00[ASN][1000 genomes]
rs3448	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34890793	1.00[CHD][hapmap]
rs3866330	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs3870339	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3870341	0.84[EUR][1000 genomes]
rs3905330	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs4052546	0.86[EUR][1000 genomes]
rs4241405	0.91[ASW][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];0.80[MKK][hapmap];0.91[YRI][hapmap];1.00[ASN][1000 genomes]
rs4241407	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes]
rs4384984	1.00[ASN][1000 genomes]
rs4855833	1.00[CHD][hapmap]
rs4855837	0.83[EUR][1000 genomes]
rs4855845	1.00[ASN][1000 genomes]
rs4855846	1.00[ASN][1000 genomes]
rs4855848	1.00[ASN][1000 genomes]
rs4855849	1.00[ASN][1000 genomes]
rs4855853	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4855858	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4855869	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4855885	1.00[ASN][1000 genomes]
rs4955413	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4955414	1.00[ASN][1000 genomes]
rs4955417	1.00[CEU][hapmap]
rs4955421	1.00[ASN][1000 genomes]
rs4955423	1.00[ASN][1000 genomes]
rs4955424	0.87[EUR][1000 genomes]
rs4955425	0.87[EUR][1000 genomes]
rs4955427	1.00[ASN][1000 genomes]
rs4955430	1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955439	1.00[ASN][1000 genomes]
rs4955443	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs56127630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273516	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62259933	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259943	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259944	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259947	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62261183	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62261249	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262672	1.00[ASN][1000 genomes]
rs62262673	1.00[ASN][1000 genomes]
rs62262675	1.00[ASN][1000 genomes]
rs6446256	1.00[ASN][1000 genomes]
rs6446257	1.00[ASN][1000 genomes]
rs6446262	0.90[EUR][1000 genomes]
rs6446275	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446285	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6446286	1.00[ASN][1000 genomes]
rs6769744	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6769821	1.00[ASN][1000 genomes]
rs6775069	0.89[EUR][1000 genomes]
rs6778080	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6783003	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6784203	0.87[EUR][1000 genomes]
rs6785045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796147	0.86[EUR][1000 genomes]
rs6797299	0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs6805609	1.00[CEU][hapmap];1.00[CHD][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808036	1.00[ASN][1000 genomes]
rs6809204	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809851	1.00[CEU][hapmap]
rs72934271	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73073004	0.80[EUR][1000 genomes]
rs73088137	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355800	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374731	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7429661	1.00[ASN][1000 genomes]
rs7613491	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617480	1.00[ASN][1000 genomes]
rs7619016	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7619789	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7620024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7622786	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7625857	0.83[EUR][1000 genomes]
rs7626076	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7631586	1.00[ASN][1000 genomes]
rs7638750	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs7647973	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651372	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653505	1.00[CHD][hapmap]
rs940045	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9586	1.00[ASN][1000 genomes]
rs9654010	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs974495	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9757181	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9809237	0.88[EUR][1000 genomes]
rs9812360	0.83[EUR][1000 genomes]
rs9817807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824435	1.00[ASN][1000 genomes]
rs9830730	1.00[ASN][1000 genomes]
rs9831648	1.00[ASN][1000 genomes]
rs9834003	1.00[ASN][1000 genomes]
rs9842132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860055	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860285	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862534	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes]
rs9867285	1.00[ASN][1000 genomes]
rs9871024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881860	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883000	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv963482	chr3:49459177-49486938	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs8897	AMT	cis	Esophagus Muscularis	GTEx
rs8897	NICN1	cis	Thyroid	GTEx
rs8897	AMT	cis	multi-tissue	Pritchard
rs8897	AMT	cis	Adipose Subcutaneous	GTEx
rs8897	AMT	cis	Thyroid	GTEx
rs8897	WDR6	cis	multi-tissue	Pritchard
rs8897	AMT	cis	lymphoblastoid	seeQTL
rs8897	AMT	cis	Esophagus Mucosa	GTEx
rs8897	NICN1	cis	multi-tissue	Pritchard
rs8897	NICN1-AS1	cis	Thyroid	GTEx
rs8897	AMT	cis	lung	GTEx
rs8897	NCKIPSD	cis	multi-tissue	Pritchard
rs8897	AMT	cis	Skin Sun Exposed Lower leg	GTEx
rs8897	WDR6	cis	Nerve Tibial	GTEx
rs8897	WDR6	cis	Muscle Skeletal	GTEx
rs8897	AMT	cis	Artery Tibial	GTEx
rs8897	AMT	cis	Artery Aorta	GTEx
rs8897	AMT	cis	Nerve Tibial	GTEx
rs8897	AMT	cis	Whole Blood	GTEx
rs8897	WDR6	cis	Esophagus Muscularis	GTEx
rs8897	AMT	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49451200-49466200	Weak transcription	Psoas Muscle	Psoas
2	chr3:49455400-49461800	Weak transcription	Aorta	Aorta
3	chr3:49455600-49461600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:49455600-49461800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:49455600-49466200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:49455800-49463800	Strong transcription	Dnd41	blood
7	chr3:49457000-49461600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:49457400-49461200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:49457400-49466000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:49457600-49465400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:49457800-49461600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:49458000-49460600	Enhancers	Osteobl	bone
13	chr3:49458000-49460800	Genic enhancers	NHLF	lung
14	chr3:49458200-49460800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:49458200-49460800	Enhancers	NH-A	brain
16	chr3:49458200-49461800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:49458600-49460600	Genic enhancers	Spleen	Spleen
18	chr3:49459000-49460600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:49459200-49460600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr3:49459200-49460600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:49459200-49462200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr3:49459200-49466200	Weak transcription	HUVEC	blood vessel
23	chr3:49459400-49460600	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:49459400-49460600	Enhancers	Fetal Brain Male	brain
25	chr3:49459400-49461800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:49459400-49465800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:49459600-49460600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:49459600-49460600	Active TSS	Brain Cingulate Gyrus	brain
29	chr3:49459600-49460600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr3:49459600-49461600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:49459600-49461800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:49459600-49465200	Weak transcription	Hela-S3	cervix
33	chr3:49459600-49465600	Weak transcription	NHDF-Ad	bronchial
34	chr3:49459600-49466200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:49459600-49466200	Weak transcription	HMEC	breast
36	chr3:49459800-49461000	Enhancers	Placenta	Placenta
37	chr3:49459800-49461400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:49459800-49461800	Weak transcription	GM12878-XiMat	blood
39	chr3:49459800-49465600	Weak transcription	NHEK	skin
40	chr3:49460000-49460600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr3:49460000-49460600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr3:49460000-49460600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr3:49460000-49460600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:49460000-49460600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:49460000-49460600	Enhancers	Adipose Nuclei	Adipose
46	chr3:49460000-49460600	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr3:49460000-49460600	Enhancers	Esophagus	oesophagus
48	chr3:49460000-49460600	Flanking Active TSS	Fetal Heart	heart
49	chr3:49460000-49460600	Enhancers	Fetal Thymus	thymus
50	chr3:49460000-49460600	Enhancers	Small Intestine	intestine

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