Variant report

Variant	rs9842132
Chromosome Location	chr3:49427933-49427934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49376284..49379172-chr3:49426276..49428497,2	K562	blood:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1009051	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10154992	1.00[ASN][1000 genomes]
rs10155014	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10452032	1.00[ASN][1000 genomes]
rs1078341	1.00[ASN][1000 genomes]
rs10865956	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1106620	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11130183	1.00[ASN][1000 genomes]
rs11130186	1.00[ASN][1000 genomes]
rs11130187	1.00[ASN][1000 genomes]
rs11130190	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130207	1.00[ASN][1000 genomes]
rs11130208	1.00[ASN][1000 genomes]
rs11710434	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715060	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11719762	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11720542	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720657	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923032	0.83[AMR][1000 genomes]
rs11928090	0.80[EUR][1000 genomes]
rs12583	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637313	1.00[ASN][1000 genomes]
rs13084037	1.00[ASN][1000 genomes]
rs13096474	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13096480	1.00[ASN][1000 genomes]
rs13322887	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463728	1.00[ASN][1000 genomes]
rs1464569	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1532204	1.00[ASN][1000 genomes]
rs1586827	1.00[ASN][1000 genomes]
rs1982861	0.80[EUR][1000 genomes]
rs2029591	1.00[ASN][1000 genomes]
rs2082923	1.00[ASN][1000 genomes]
rs2099526	1.00[ASN][1000 genomes]
rs2131108	1.00[ASN][1000 genomes]
rs2140270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2312462	0.80[EUR][1000 genomes]
rs2329021	1.00[ASN][1000 genomes]
rs2329025	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3448	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713889	1.00[ASN][1000 genomes]
rs3866330	0.80[EUR][1000 genomes]
rs3870339	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3870341	0.80[EUR][1000 genomes]
rs3905330	0.84[EUR][1000 genomes]
rs4052546	0.82[EUR][1000 genomes]
rs4241405	1.00[ASN][1000 genomes]
rs4241407	0.80[EUR][1000 genomes]
rs4384984	1.00[ASN][1000 genomes]
rs4855845	1.00[ASN][1000 genomes]
rs4855846	1.00[ASN][1000 genomes]
rs4855848	1.00[ASN][1000 genomes]
rs4855849	1.00[ASN][1000 genomes]
rs4855853	1.00[ASN][1000 genomes]
rs4855858	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4855869	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4855885	1.00[ASN][1000 genomes]
rs4955413	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4955414	1.00[ASN][1000 genomes]
rs4955421	1.00[ASN][1000 genomes]
rs4955423	1.00[ASN][1000 genomes]
rs4955424	0.91[EUR][1000 genomes]
rs4955425	0.91[EUR][1000 genomes]
rs4955427	1.00[ASN][1000 genomes]
rs4955430	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955439	1.00[ASN][1000 genomes]
rs4955443	1.00[ASN][1000 genomes]
rs56127630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273516	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62259933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259943	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259944	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62259947	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62261183	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62261249	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62262672	1.00[ASN][1000 genomes]
rs62262673	1.00[ASN][1000 genomes]
rs62262675	1.00[ASN][1000 genomes]
rs6446256	1.00[ASN][1000 genomes]
rs6446257	1.00[ASN][1000 genomes]
rs6446262	0.94[EUR][1000 genomes]
rs6446275	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446285	1.00[ASN][1000 genomes]
rs6446286	1.00[ASN][1000 genomes]
rs6769744	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6769821	1.00[ASN][1000 genomes]
rs6775069	0.93[EUR][1000 genomes]
rs6778080	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6783003	0.86[EUR][1000 genomes]
rs6784203	0.91[EUR][1000 genomes]
rs6785045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790105	0.83[EUR][1000 genomes]
rs6796147	0.90[EUR][1000 genomes]
rs6797299	1.00[ASN][1000 genomes]
rs6805609	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808036	1.00[ASN][1000 genomes]
rs6809204	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934271	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088137	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355800	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7374731	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7429661	1.00[ASN][1000 genomes]
rs7613491	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617480	1.00[ASN][1000 genomes]
rs7619016	1.00[ASN][1000 genomes]
rs7619789	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7620024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7622786	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7626076	1.00[ASN][1000 genomes]
rs7631586	1.00[ASN][1000 genomes]
rs7638750	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644148	0.83[EUR][1000 genomes]
rs7647973	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7651372	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs940045	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9586	1.00[ASN][1000 genomes]
rs9654010	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs974495	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9757181	0.82[EUR][1000 genomes]
rs9809237	0.84[EUR][1000 genomes]
rs9812360	0.87[EUR][1000 genomes]
rs9817807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824435	1.00[ASN][1000 genomes]
rs9830730	1.00[ASN][1000 genomes]
rs9831648	1.00[ASN][1000 genomes]
rs9834003	1.00[ASN][1000 genomes]
rs9847585	0.81[EUR][1000 genomes]
rs9860055	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860285	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862534	0.80[EUR][1000 genomes]
rs9867285	1.00[ASN][1000 genomes]
rs9871024	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881860	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883000	1.00[ASN][1000 genomes]

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs9842132	AMT	cis	Nerve Tibial	GTEx
rs9842132	AMT	cis	Thyroid	GTEx
rs9842132	AMT	cis	Adipose Subcutaneous	GTEx
rs9842132	AMT	cis	Muscle Skeletal	GTEx
rs9842132	AMT	cis	Artery Tibial	GTEx
rs9842132	NICN1-AS1	cis	Thyroid	GTEx
rs9842132	AMT	cis	Artery Aorta	GTEx
rs9842132	AMT	cis	Whole Blood	GTEx
rs9842132	WDR6	cis	Nerve Tibial	GTEx
rs9842132	WDR6	cis	Esophagus Muscularis	GTEx
rs9842132	NICN1	cis	Thyroid	GTEx
rs9842132	AMT	cis	lung	GTEx
rs9842132	WDR6	cis	Muscle Skeletal	GTEx
rs9842132	AMT	cis	Esophagus Mucosa	GTEx
rs9842132	AMT	Cis_1M	lymphoblastoid	RTeQTL
rs9842132	AMT	cis	Esophagus Muscularis	GTEx
rs9842132	AMT	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:49411000-49434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:49413200-49431800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:49413200-49432000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:49413200-49432000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:49413200-49432000	Weak transcription	Fetal Kidney	kidney
9	chr3:49413200-49433200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:49413200-49435000	Weak transcription	Brain Angular Gyrus	brain
11	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
12	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:49413400-49431800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:49413400-49433600	Weak transcription	Brain Germinal Matrix	brain
16	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:49413600-49430600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:49413600-49432000	Weak transcription	Fetal Lung	lung
19	chr3:49413600-49433200	Weak transcription	Colonic Mucosa	Colon
20	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
21	chr3:49416200-49430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:49416200-49431800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:49416200-49433200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:49416200-49435200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:49416400-49429400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:49416400-49432200	Weak transcription	Placenta	Placenta
27	chr3:49417800-49437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:49418000-49432600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:49419000-49430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:49422200-49443000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:49423400-49431800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:49423800-49430200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr3:49424000-49430600	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:49424000-49432000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:49424200-49432000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:49424200-49432000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:49424200-49432000	Weak transcription	Liver	Liver
38	chr3:49424200-49434800	Weak transcription	Brain Anterior Caudate	brain
39	chr3:49424200-49435000	Weak transcription	Stomach Mucosa	stomach
40	chr3:49424200-49443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr3:49424400-49428000	Weak transcription	GM12878-XiMat	blood
42	chr3:49424400-49431800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:49424400-49432000	Weak transcription	HepG2	liver
44	chr3:49424400-49435000	Weak transcription	Small Intestine	intestine
45	chr3:49425000-49428200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:49425000-49428200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:49425400-49428000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr3:49425400-49428200	Strong transcription	Fetal Thymus	thymus
49	chr3:49425400-49428200	Genic enhancers	Monocytes-CD14+_RO01746	blood
50	chr3:49425400-49429000	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links