The 2.0 version of rSNPBase

Variant report

Variant rs62259944
Chromosome Location chr3:49430883-49430884
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49396800-49438800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:49399000-49448000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr3:49406000-49445200 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr3:49411000-49434600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr3:49413200-49431800 Weak transcription Duodenum Mucosa Duodenum
6 chr3:49413200-49432000 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr3:49413200-49432000 Weak transcription iPS-20b Cell Line embryonic stem cell
8 chr3:49413200-49432000 Weak transcription Fetal Kidney kidney
9 chr3:49413200-49433200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr3:49413200-49435000 Weak transcription Brain Angular Gyrus brain
11 chr3:49413200-49441400 Weak transcription Aorta Aorta
12 chr3:49413200-49443000 Weak transcription Brain Cingulate Gyrus brain
13 chr3:49413200-49447400 Weak transcription H9 Cell Line embryonic stem cell
14 chr3:49413400-49431800 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr3:49413400-49433600 Weak transcription Brain Germinal Matrix brain
16 chr3:49413400-49439000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr3:49413600-49432000 Weak transcription Fetal Lung lung
18 chr3:49413600-49433200 Weak transcription Colonic Mucosa Colon
19 chr3:49413600-49441000 Weak transcription Fetal Brain Female brain
20 chr3:49416200-49431800 Weak transcription Placenta Amnion Placenta Amnion
21 chr3:49416200-49433200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr3:49416200-49435200 Weak transcription Brain Inferior Temporal Lobe brain
23 chr3:49416400-49432200 Weak transcription Placenta Placenta
24 chr3:49417800-49437800 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr3:49418000-49432600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr3:49422200-49443000 Weak transcription Rectal Smooth Muscle rectum
27 chr3:49423400-49431800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr3:49424000-49432000 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr3:49424200-49432000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr3:49424200-49432000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr3:49424200-49432000 Weak transcription Liver Liver
32 chr3:49424200-49434800 Weak transcription Brain Anterior Caudate brain
33 chr3:49424200-49435000 Weak transcription Stomach Mucosa stomach
34 chr3:49424200-49443400 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr3:49424400-49431800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr3:49424400-49432000 Weak transcription HepG2 liver
37 chr3:49424400-49435000 Weak transcription Small Intestine intestine
38 chr3:49425400-49435000 Strong transcription Fetal Intestine Small intestine
39 chr3:49425800-49437800 Weak transcription Brain Hippocampus Middle brain
40 chr3:49426000-49431800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr3:49426000-49432000 Weak transcription Adipose Nuclei Adipose
42 chr3:49426000-49432000 Weak transcription Stomach Smooth Muscle stomach
43 chr3:49426000-49436600 Weak transcription Gastric stomach
44 chr3:49426000-49444000 Weak transcription Esophagus oesophagus
45 chr3:49426200-49431800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr3:49426200-49431800 Weak transcription Hela-S3 cervix
47 chr3:49426200-49432000 Weak transcription K562 blood
48 chr3:49426200-49437800 Weak transcription Brain Substantia Nigra brain
49 chr3:49426200-49443000 Weak transcription NHLF lung
50 chr3:49426400-49431800 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015