Variant report

Variant	rs2295890
Chromosome Location	chr6:86159462-86159463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:86159369-86160586	GM12878	blood:	n/a	n/a
2	HDAC2	chr6:86159381-86160167	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:86159408-86160205	A549	lung:	n/a	n/a
4	CTCF	chr6:86159320-86159470	HEEpiC	esophagus:	n/a	n/a
5	POLR2A	chr6:86159446-86160145	A549	lung:	n/a	n/a
6	SIN3AK20	chr6:86158845-86160496	SK-N-SH	brain:	n/a	n/a
7	EP300	chr6:86159035-86159566	GM12878	blood:	n/a	chr6:86159349-86159363
8	YY1	chr6:86159196-86160157	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:86159138-86160328	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:86159039-86160101	GM12892	blood:	n/a	n/a
11	SP1	chr6:86158931-86159680	GM12878	blood:	n/a	chr6:86159338-86159352 chr6:86159337-86159349 chr6:86159339-86159348
12	E2F6	chr6:86159056-86160381	H1-hESC	embryonic stem cell:	n/a	chr6:86159151-86159160 chr6:86159336-86159348
13	CHD1	chr6:86158995-86160647	GM12878	blood:	n/a	chr6:86159789-86159799 chr6:86159462-86159472 chr6:86159818-86159828
14	POLR2A	chr6:86159012-86160615	HUVEC	blood vessel:	n/a	n/a
15	ATF2	chr6:86158918-86160044	GM12878	blood:	n/a	chr6:86159672-86159683
16	POLR2A	chr6:86159371-86160005	GM10847	blood:	n/a	n/a
17	STAT5A	chr6:86159160-86160043	GM12878	blood:	n/a	n/a
18	RUNX3	chr6:86158936-86160509	GM12878	blood:	n/a	chr6:86159390-86159399 chr6:86159390-86159405
19	CUX1	chr6:86158988-86159704	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:86159028-86160547	GM12892	blood:	n/a	n/a
21	KAP1	chr6:86159430-86160736	HEK293	kidney:	n/a	n/a
22	MAX	chr6:86159250-86160184	H1-hESC	embryonic stem cell:	n/a	chr6:86159340-86159350
23	POLR2A	chr6:86159101-86160075	SK-N-SH	brain:	n/a	n/a
24	ZBTB7A	chr6:86159289-86160136	ECC-1	luminal epithelium:	n/a	n/a
25	CTBP2	chr6:86159262-86160381	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr6:86159112-86159556	GM12878	blood:	n/a	n/a
27	NRF1	chr6:86159083-86159670	GM12878	blood:	n/a	n/a
28	REST	chr6:86158954-86159499	SK-N-SH	brain:	n/a	chr6:86159087-86159096 chr6:86159087-86159100
29	POLR2A	chr6:86159028-86160479	GM19193	blood:	n/a	n/a
30	SP1	chr6:86159335-86160086	A549	lung:	n/a	chr6:86159338-86159352 chr6:86159749-86159758 chr6:86159748-86159760 chr6:86159750-86159759 chr6:86159726-86159735 chr6:86159749-86159759 chr6:86159749-86159759 chr6:86159748-86159760 chr6:86159749-86159758 chr6:86159749-86159763 chr6:86159337-86159349 chr6:86159339-86159348
31	TAF1	chr6:86159060-86159554	GM12878	blood:	n/a	n/a
32	TAF1	chr6:86159004-86160525	SK-N-SH	brain:	n/a	n/a
33	RFX5	chr6:86159126-86160020	GM12878	blood:	n/a	n/a
34	MXI1	chr6:86158993-86161139	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:86159029-86160358	H1-neurons	neurons:	n/a	n/a
36	TAF1	chr6:86159124-86160272	H1-hESC	embryonic stem cell:	n/a	n/a
37	SIN3AK20	chr6:86159352-86160530	PANC-1	pancreas:	n/a	n/a
38	RAD21	chr6:86158912-86160723	IMR90	lung:	n/a	chr6:86160263-86160275
39	BRCA1	chr6:86159402-86160674	Hela-S3	cervix:	n/a	n/a
40	CREB1	chr6:86159198-86160402	H1-hESC	embryonic stem cell:	n/a	n/a
41	MTA3	chr6:86159070-86159523	GM12878	blood:	n/a	n/a
42	ZBTB7A	chr6:86159445-86159850	HepG2	liver:	n/a	n/a
43	POLR2A	chr6:86159437-86160495	H1-neurons	neurons:	n/a	n/a
44	EP300	chr6:86158952-86160225	SK-N-SH	brain:	n/a	chr6:86159349-86159363
45	GATA3	chr6:86159332-86160800	A549	lung:	n/a	chr6:86160666-86160682 chr6:86159351-86159361 chr6:86160664-86160685
46	POLR2A	chr6:86159430-86160174	A549	lung:	n/a	n/a
47	POLR2A	chr6:86159153-86160136	PANC-1	pancreas:	n/a	n/a
48	TCF7L2	chr6:86159377-86159645	PANC-1	pancreas:	n/a	n/a
49	POLR2A	chr6:86159045-86160513	GM18951	blood:	n/a	n/a
50	PAX5	chr6:86158985-86159672	GM12892	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:86159426-86159476	HIPEpiC	eye:	n/a
2	chr6:86159426-86159476	Hepatocyte	liver:	n/a
3	chr6:86159426-86159476	HCF	heart:	n/a
4	chr6:86159426-86159476	NHBE	bronchial:	n/a
5	chr6:86159426-86159476	BE2_C	brain:	n/a
6	chr6:86159426-86159476	CMK	blood:	n/a
7	chr6:86159426-86159476	GM12891	blood:	n/a
8	chr6:86159426-86159476	Jurkat	blood:	n/a
9	chr6:86159426-86159476	SK-N-MC	brain:	n/a
10	chr6:86159426-86159476	ProgFib	skin:	n/a
11	chr6:86159426-86159476	HRCEpiC	kidney:	n/a
12	chr6:86159426-86159476	PrEC	prostate:	n/a
13	chr6:86159426-86159476	AG04450	lung:	fetal
14	chr6:86159426-86159476	HCT-116	colon:	n/a
15	chr6:86159426-86159476	SKMC	muscle:	n/a
16	chr6:86159426-86159476	MCF10A-Er-Src	breast:	n/a
17	chr6:86159426-86159476	HCM	heart:	n/a
18	chr6:86159426-86159476	NB4	blood:	n/a
19	chr6:86159426-86159476	GM12878	blood:	n/a
20	chr6:86159426-86159476	K562	blood:	n/a
21	chr6:86159426-86159476	SK-N-SH_RA	brain:	n/a
22	chr6:86159426-86159476	NHDF-neo	bronchial:	n/a
23	chr6:86159426-86159476	SAEC	small airway:	n/a
24	chr6:86159426-86159476	HRPEpiC	eye:	n/a
25	chr6:86159426-86159476	GM19239	blood:	n/a
26	chr6:86159426-86159476	HNPCEpiC	eye:	n/a
27	chr6:86159426-86159476	HEEpiC	esophagus:	n/a
28	chr6:86159426-86159476	T-47D	breast:	n/a
29	chr6:86159426-86159476	HEK293	kidney:	embryo
30	chr6:86159426-86159476	IMR90	lung:	fetal
31	chr6:86159426-86159476	A549	lung:	n/a
32	chr6:86159426-86159476	U87	brain:	n/a
33	chr6:86159426-86159476	Hela-S3	cervix:	n/a
34	chr6:86159426-86159476	MCF-7	breast:	n/a
35	chr6:86159426-86159476	HL-60	blood:	n/a
36	chr6:86159426-86159476	H1-hESC	embryonic stem cell:	embryo
37	chr6:86159426-86159476	RPTEC	kidney:	n/a
38	chr6:86159426-86159476	PFSK-1	brain:	n/a
39	chr6:86159426-86159476	GM12892	blood:	n/a
40	chr6:86159426-86159476	ECC-1	luminal epithelium:	n/a
41	chr6:86159426-86159476	SK-N-SH	brain:	n/a
42	chr6:86159426-86159476	HepG2	liver:	n/a
43	chr6:86159426-86159476	GM06990	blood:	n/a
44	chr6:86159426-86159476	AG09319	gingival:	n/a
45	chr6:86159426-86159476	AG04449	skin:	fetal
46	chr6:86159426-86159476	PANC-1	pancreas:	n/a
47	chr6:86159426-86159476	HAEpiC	amniotic membrane:	n/a
48	chr6:86159426-86159476	AoSMC	blood vessel:	n/a
49	chr6:86159426-86159476	HRE	kidney:	n/a
50	chr6:86159426-86159476	NH-A	brain:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:47894891..47895420-chr6:86159383..86160041,2	Hela-S3	cervix:

Variant related genes	Relation type
NT5E	TF binding region
NT5E	CpG island
ENSG00000124201	Chromatin interaction
ENSG00000177410	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1000632	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1000633	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1000634	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11508041	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963844	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968230	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968238	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055597	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12524836	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12528808	0.82[ASN][1000 genomes]
rs12662033	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664908	0.91[ASN][1000 genomes]
rs1322401	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322403	0.85[ASN][1000 genomes]
rs1322404	0.85[ASN][1000 genomes]
rs1570310	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1570311	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1590279	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1590280	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1665786	0.85[ASN][1000 genomes]
rs1744121	0.85[ASN][1000 genomes]
rs1744122	0.85[ASN][1000 genomes]
rs2208722	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2229524	0.82[ASN][1000 genomes]
rs3812137	0.82[ASN][1000 genomes]
rs3812139	0.82[ASN][1000 genomes]
rs4144166	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4144167	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4327657	0.82[ASN][1000 genomes]
rs4373339	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4400191	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4458647	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463232	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487548	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565270	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4571538	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624841	0.85[ASN][1000 genomes]
rs490079	0.85[ASN][1000 genomes]
rs494562	0.85[ASN][1000 genomes]
rs495469	0.85[ASN][1000 genomes]
rs495472	0.85[ASN][1000 genomes]
rs498289	0.85[ASN][1000 genomes]
rs515980	0.85[ASN][1000 genomes]
rs520090	0.85[ASN][1000 genomes]
rs521005	0.85[ASN][1000 genomes]
rs522129	0.85[ASN][1000 genomes]
rs522915	0.85[ASN][1000 genomes]
rs527670	0.85[ASN][1000 genomes]
rs543359	0.85[ASN][1000 genomes]
rs544403	0.85[ASN][1000 genomes]
rs544408	0.85[ASN][1000 genomes]
rs547052	0.85[ASN][1000 genomes]
rs547963	0.85[ASN][1000 genomes]
rs550499	0.85[ASN][1000 genomes]
rs554113	0.85[ASN][1000 genomes]
rs567686	0.85[ASN][1000 genomes]
rs573737	0.85[ASN][1000 genomes]
rs573892	0.85[ASN][1000 genomes]
rs575477	0.85[ASN][1000 genomes]
rs589255	0.85[ASN][1000 genomes]
rs59797285	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617483	0.85[ASN][1000 genomes]
rs618448	0.85[ASN][1000 genomes]
rs619299	0.85[ASN][1000 genomes]
rs619753	0.85[ASN][1000 genomes]
rs632163	0.85[ASN][1000 genomes]
rs637346	0.85[ASN][1000 genomes]
rs638745	0.85[ASN][1000 genomes]
rs640093	0.85[ASN][1000 genomes]
rs683218	0.85[ASN][1000 genomes]
rs6900270	0.82[ASN][1000 genomes]
rs6902904	0.82[ASN][1000 genomes]
rs6913634	0.82[ASN][1000 genomes]
rs6919207	0.85[ASN][1000 genomes]
rs6942065	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73751215	0.82[ASN][1000 genomes]
rs7746186	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749745	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750970	0.85[ASN][1000 genomes]
rs7753022	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7753711	0.85[ASN][1000 genomes]
rs7753936	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7753950	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7754559	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7763191	0.85[ASN][1000 genomes]
rs7767626	0.85[ASN][1000 genomes]
rs7767800	0.85[ASN][1000 genomes]
rs7771187	0.82[ASN][1000 genomes]
rs7771860	0.85[ASN][1000 genomes]
rs7772233	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294335	0.85[ASN][1000 genomes]
rs9294336	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342039	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344518	0.85[ASN][1000 genomes]
rs9344519	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344520	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344521	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344522	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344523	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344524	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344525	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344526	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344527	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344528	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344529	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9344530	0.82[ASN][1000 genomes]
rs9353309	0.85[ASN][1000 genomes]
rs9353310	0.85[ASN][1000 genomes]
rs9353312	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353313	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353314	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353315	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353316	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353317	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359655	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9359656	0.88[ASN][1000 genomes]
rs9362211	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9362212	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9362213	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9362214	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9362215	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9362216	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362217	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362218	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362219	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362220	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362221	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362223	0.82[ASN][1000 genomes]
rs9362224	0.81[ASN][1000 genomes]
rs9362225	0.82[ASN][1000 genomes]
rs9444342	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9444343	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9444346	0.80[EUR][1000 genomes]
rs9450271	0.82[ASN][1000 genomes]
rs9450274	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450278	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450279	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450280	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9450286	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	esv3326486	chr6:86020165-86292456	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv3435075	chr6:86052235-86271910	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv463937	chr6:86114766-86264374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv604092	chr6:86114766-86264374	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv520112	chr6:86144875-86247759	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2295890	NT5E	cis	Thyroid	GTEx
rs2295890	NT5E	Cis_1M	lymphoblastoid	RTeQTL
rs2295890	NT5E	cis	Whole Blood	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86157800-86162200	Active TSS	Stomach Smooth Muscle	stomach
2	chr6:86157800-86162400	Active TSS	Colon Smooth Muscle	Colon
3	chr6:86158000-86161200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:86158000-86162000	Active TSS	Aorta	Aorta
5	chr6:86158200-86160000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:86158200-86162600	Active TSS	NHLF	lung
7	chr6:86158400-86162600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:86158600-86160200	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr6:86158600-86160200	Active TSS	Brain Hippocampus Middle	brain
10	chr6:86158600-86160800	Active TSS	Brain Substantia Nigra	brain
11	chr6:86158600-86161400	Active TSS	Psoas Muscle	Psoas
12	chr6:86158600-86161400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr6:86158600-86161600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:86158600-86161600	Active TSS	Ovary	ovary
15	chr6:86158800-86159800	Active TSS	Right Atrium	heart
16	chr6:86158800-86160000	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:86158800-86160400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:86158800-86160400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:86158800-86160600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:86158800-86160600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:86158800-86160800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr6:86158800-86160800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:86158800-86161000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr6:86158800-86161400	Active TSS	NH-A	brain
25	chr6:86158800-86161400	Active TSS	Osteobl	bone
26	chr6:86158800-86161600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr6:86158800-86161600	Active TSS	A549	lung
28	chr6:86158800-86161600	Active TSS	HMEC	breast
29	chr6:86158800-86161600	Active TSS	HSMM	muscle
30	chr6:86158800-86161600	Active TSS	HSMMtube	muscle
31	chr6:86158800-86162000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:86158800-86162000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:86158800-86162000	Active TSS	Rectal Smooth Muscle	rectum
34	chr6:86158800-86162000	Active TSS	GM12878-XiMat	blood
35	chr6:86158800-86162600	Active TSS	NHDF-Ad	bronchial
36	chr6:86159000-86159600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:86159000-86159600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:86159000-86159600	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr6:86159000-86159600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
40	chr6:86159000-86159600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:86159000-86159600	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:86159000-86159600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
43	chr6:86159000-86159600	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr6:86159000-86159600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr6:86159000-86159600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
46	chr6:86159000-86159800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:86159000-86160000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:86159000-86160000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
49	chr6:86159000-86160000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
50	chr6:86159000-86160000	Bivalent/Poised TSS	Fetal Stomach	stomach

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