The 2.0 version of rSNPBase

Variant report

Variant rs2312461
Chromosome Location chr3:49558658-49558659
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49529600-49568600 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr3:49539600-49568600 Weak transcription Small Intestine intestine
3 chr3:49546200-49577000 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr3:49547000-49572000 Weak transcription Fetal Brain Male brain
5 chr3:49547400-49562200 Strong transcription Primary T cells from cord blood blood
6 chr3:49547600-49564200 Strong transcription Fetal Intestine Small intestine
7 chr3:49547800-49559000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr3:49547800-49560400 Strong transcription Fetal Thymus thymus
9 chr3:49547800-49562800 Strong transcription Fetal Stomach stomach
10 chr3:49548000-49562800 Strong transcription Fetal Intestine Large intestine
11 chr3:49548400-49577400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr3:49549200-49568800 Weak transcription Osteobl bone
13 chr3:49550800-49568400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr3:49551200-49561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr3:49551400-49571400 Weak transcription Stomach Mucosa stomach
16 chr3:49551400-49572200 Weak transcription NH-A brain
17 chr3:49551600-49567600 Weak transcription K562 blood
18 chr3:49551600-49569400 Weak transcription Fetal Kidney kidney
19 chr3:49553200-49559400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr3:49553800-49568400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr3:49554000-49567000 Weak transcription A549 lung
22 chr3:49554000-49567600 Weak transcription Placenta Amnion Placenta Amnion
23 chr3:49554400-49568200 Weak transcription NHDF-Ad bronchial
24 chr3:49554800-49559400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr3:49555200-49561000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
26 chr3:49555400-49560200 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr3:49555400-49564000 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr3:49555400-49567600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr3:49555400-49567600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr3:49555400-49567800 Weak transcription Primary hematopoietic stem cells blood
31 chr3:49555400-49568000 Weak transcription Muscle Satellite Cultured Cells --
32 chr3:49555400-49568200 Weak transcription NHLF lung
33 chr3:49555400-49568600 Weak transcription Fetal Lung lung
34 chr3:49555600-49567800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr3:49555800-49568400 Weak transcription HUVEC blood vessel
36 chr3:49555800-49572200 Weak transcription ES-I3 Cell Line embryonic stem cell
37 chr3:49556000-49559200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr3:49556000-49568000 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr3:49556000-49568000 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr3:49556000-49568600 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr3:49556200-49560200 Weak transcription Dnd41 blood
42 chr3:49556200-49567000 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr3:49556200-49567400 Weak transcription Rectal Smooth Muscle rectum
44 chr3:49556200-49567600 Weak transcription Primary T helper cells PMA-I stimulated --
45 chr3:49556200-49568000 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr3:49556400-49560400 Weak transcription Primary B cells from peripheral blood blood
47 chr3:49556400-49561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr3:49556400-49567800 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr3:49556400-49567800 Weak transcription Primary monocytes fromperipheralblood blood
50 chr3:49556600-49566800 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015