The 2.0 version of rSNPBase

Variant report

Variant rs34196454
Chromosome Location chr3:49563456-49563457
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:49529600-49568600 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr3:49539600-49568600 Weak transcription Small Intestine intestine
3 chr3:49546200-49577000 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr3:49547000-49572000 Weak transcription Fetal Brain Male brain
5 chr3:49547600-49564200 Strong transcription Fetal Intestine Small intestine
6 chr3:49548400-49577400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr3:49549200-49568800 Weak transcription Osteobl bone
8 chr3:49550800-49568400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr3:49551400-49571400 Weak transcription Stomach Mucosa stomach
10 chr3:49551400-49572200 Weak transcription NH-A brain
11 chr3:49551600-49567600 Weak transcription K562 blood
12 chr3:49551600-49569400 Weak transcription Fetal Kidney kidney
13 chr3:49553800-49568400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr3:49554000-49567000 Weak transcription A549 lung
15 chr3:49554000-49567600 Weak transcription Placenta Amnion Placenta Amnion
16 chr3:49554400-49568200 Weak transcription NHDF-Ad bronchial
17 chr3:49555400-49564000 Enhancers Breast Myoepithelial Primary Cells Breast
18 chr3:49555400-49567600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr3:49555400-49567600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr3:49555400-49567800 Weak transcription Primary hematopoietic stem cells blood
21 chr3:49555400-49568000 Weak transcription Muscle Satellite Cultured Cells --
22 chr3:49555400-49568200 Weak transcription NHLF lung
23 chr3:49555400-49568600 Weak transcription Fetal Lung lung
24 chr3:49555600-49567800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr3:49555800-49568400 Weak transcription HUVEC blood vessel
26 chr3:49555800-49572200 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr3:49556000-49568000 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr3:49556000-49568000 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr3:49556000-49568600 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr3:49556200-49567000 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr3:49556200-49567400 Weak transcription Rectal Smooth Muscle rectum
32 chr3:49556200-49567600 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr3:49556200-49568000 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr3:49556400-49567800 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr3:49556400-49567800 Weak transcription Primary monocytes fromperipheralblood blood
36 chr3:49556600-49566800 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr3:49556600-49567200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr3:49557000-49567800 Weak transcription Primary T cells fromperipheralblood blood
39 chr3:49557000-49567800 Weak transcription Colonic Mucosa Colon
40 chr3:49557000-49568400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
41 chr3:49557200-49567800 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr3:49557200-49568200 Weak transcription Colon Smooth Muscle Colon
43 chr3:49557600-49572000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr3:49557800-49567400 Weak transcription H9 Cell Line embryonic stem cell
45 chr3:49557800-49567400 Weak transcription Rectal Mucosa Donor 29 rectum
46 chr3:49557800-49567600 Weak transcription Primary hematopoietic stem cells short term culture blood
47 chr3:49558000-49567600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr3:49558000-49567600 Weak transcription Aorta Aorta
49 chr3:49558000-49568000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr3:49558000-49568200 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015