Variant report

Variant	rs6779524
Chromosome Location	chr3:49450449-49450450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:47)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:47 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:49449098-49450668	ProgFib	skin:	n/a	n/a
2	POLR2A	chr3:49450335-49450625	HCT-116	colon:	n/a	n/a
3	WRNIP1	chr3:49449552-49450958	GM12878	blood:	n/a	n/a
4	STAT5A	chr3:49449129-49450846	GM12878	blood:	n/a	n/a
5	MAZ	chr3:49448615-49450630	IMR90	lung:	n/a	chr3:49450267-49450276 chr3:49448867-49448876 chr3:49448924-49448934 chr3:49449585-49449594
6	POLR2A	chr3:49449080-49450961	GM12878	blood:	n/a	n/a
7	POLR2A	chr3:49449153-49450864	GM12891	blood:	n/a	n/a
8	POLR2A	chr3:49449140-49450780	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:49448833-49450449	HL-60	blood:	n/a	n/a
10	POLR2A	chr3:49448687-49450851	GM12878	blood:	n/a	n/a
11	POLR2A	chr3:49449019-49450673	U87	brain:	n/a	n/a
12	POLR2A	chr3:49449048-49450774	GM12892	blood:	n/a	n/a
13	POLR2A	chr3:49448955-49450773	GM12891	blood:	n/a	n/a
14	POLR2A	chr3:49448779-49450654	ECC-1	luminal epithelium:	n/a	n/a
15	POLR2A	chr3:49448786-49450608	GM12878	blood:	n/a	n/a
16	HCFC1	chr3:49448164-49450849	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr3:49448884-49450861	HepG2	liver:	n/a	n/a
18	POLR2A	chr3:49448595-49451034	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr3:49450349-49450746	K562	blood:	n/a	n/a
20	RUNX3	chr3:49449145-49450783	GM12878	blood:	n/a	n/a
21	POLR2A	chr3:49448881-49450803	K562	blood:	n/a	n/a
22	CHD1	chr3:49448648-49450470	GM12878	blood:	n/a	n/a
23	POLR2A	chr3:49448292-49450804	IMR90	lung:	n/a	n/a
24	POLR2A	chr3:49449149-49450771	GM12878	blood:	n/a	n/a
25	POLR2A	chr3:49448395-49450585	PBDE	blood:	n/a	n/a
26	POLR2A	chr3:49448936-49450679	U87	brain:	n/a	n/a
27	CHD1	chr3:49446752-49450840	IMR90	lung:	n/a	n/a
28	POLR2A	chr3:49448694-49450570	HUVEC	blood vessel:	n/a	n/a
29	MTA3	chr3:49449151-49451027	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:49449094-49450507	H1-hESC	embryonic stem cell:	n/a	n/a
31	RELA	chr3:49448514-49450624	GM10847	blood:	n/a	n/a
32	POLR2A	chr3:49448617-49450854	GM12892	blood:	n/a	n/a
33	POLR2A	chr3:49449078-49450777	GM12891	blood:	n/a	n/a
34	POLR2A	chr3:49448883-49450526	HUVEC	blood vessel:	n/a	n/a
35	POLR2A	chr3:49448768-49450864	HepG2	liver:	n/a	n/a
36	POLR2A	chr3:49448957-49451108	GM12892	blood:	n/a	n/a
37	POLR2A	chr3:49448801-49450760	GM12878	blood:	n/a	n/a
38	POLR2A	chr3:49450448-49450606	MCF-7	breast:	n/a	n/a
39	POLR2A	chr3:49449047-49451021	GM12891	blood:	n/a	n/a
40	POLR2A	chr3:49448762-49450770	H1-hESC	embryonic stem cell:	n/a	n/a
41	MXI1	chr3:49447410-49450981	SK-N-SH	brain:	n/a	n/a
42	POLR2A	chr3:49448891-49450546	GM18505	blood:	n/a	n/a
43	SMARCB1	chr3:49448814-49450476	Hela-S3	cervix:	n/a	n/a
44	MXI1	chr3:49447853-49450922	IMR90	lung:	n/a	n/a
45	POLR2A	chr3:49448755-49450893	HL-60	blood:	n/a	n/a
46	POLR2A	chr3:49448850-49450570	GM19193	blood:	n/a	n/a
47	POLR2A	chr3:49449160-49450810	GM12891	blood:	n/a	n/a

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:49449662..49452069-chr3:49709335..49712259,2	K562	blood:
2	chr3:49375112..49379681-chr3:49446166..49452291,17	K562	blood:
3	chr3:49376293..49379620-chr3:49448851..49451356,3	MCF-7	breast:
4	chr3:49130643..49132910-chr3:49449200..49450809,2	MCF-7	breast:
5	chr3:49449761..49451817-chr3:49454782..49457438,2	MCF-7	breast:
6	chr3:49197673..49199686-chr3:49449232..49451070,2	K562	blood:
7	chr3:49203572..49205247-chr3:49448132..49451113,3	MCF-7	breast:
8	chr3:48955974..48957797-chr3:49448912..49450941,2	K562	blood:
9	chr3:49448736..49451146-chr3:49507489..49509395,2	MCF-7	breast:
10	chr3:49447402..49451449-chr3:49505916..49509646,7	K562	blood:
11	chr3:49448668..49451033-chr3:49723995..49726731,2	MCF-7	breast:
12	chr3:49448910..49451821-chr3:49459047..49464749,5	MCF-7	breast:
13	chr3:49449931..49451765-chr3:49466713..49468674,2	MCF-7	breast:
14	chr3:49058292..49060438-chr3:49448532..49450849,2	MCF-7	breast:
15	chr3:49375789..49379333-chr3:49446166..49450939,13	K562	blood:
16	chr3:49448236..49450769-chr3:49505936..49509558,3	MCF-7	breast:
17	chr3:49054710..49056578-chr3:49447542..49450495,2	K562	blood:
18	chr3:49447402..49452044-chr3:49506038..49509646,9	K562	blood:
19	chr3:49131116..49132928-chr3:49448988..49450506,2	MCF-7	breast:
20	chr3:49129916..49132990-chr3:49447157..49451022,6	K562	blood:
21	chr3:49447469..49451415-chr3:49463621..49468909,12	K562	blood:

No data

Variant related genes	Relation type
RHOA	TF binding region
ENSG00000114316	Chromatin interaction
ENSG00000145020	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000177479	Chromatin interaction
ENSG00000177352	Chromatin interaction
ENSG00000198218	Chromatin interaction
ENSG00000270441	Chromatin interaction
ENSG00000235261	Chromatin interaction
ENSG00000221883	Chromatin interaction
ENSG00000173402	Chromatin interaction
ENSG00000173531	Chromatin interaction
ENSG00000164062	Chromatin interaction
ENSG00000145029	Chromatin interaction
ENSG00000178149	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10212296	0.81[AMR][1000 genomes]
rs1050088	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1050450	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10640	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865955	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs11130192	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11130193	0.83[ASN][1000 genomes]
rs11130196	0.82[ASN][1000 genomes]
rs11130199	0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs11706370	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711485	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11711536	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11712569	0.83[AMR][1000 genomes]
rs11713474	0.83[AMR][1000 genomes]
rs11715915	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11716974	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11719996	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11720264	1.00[JPT][hapmap]
rs11922013	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926781	0.82[AMR][1000 genomes]
rs12330269	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12489092	1.00[JPT][hapmap]
rs13078949	0.85[GIH][hapmap]
rs13079082	0.85[AMR][1000 genomes]
rs13079643	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13086611	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13087851	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13090388	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1464566	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1464567	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1464568	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1568661	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs17080528	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17650792	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1800668	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1801143	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs1987628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34196454	0.83[AMR][1000 genomes]
rs34293138	0.86[AMR][1000 genomes]
rs34363169	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34427167	0.82[AMR][1000 genomes]
rs34588335	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34937635	0.87[ASN][1000 genomes]
rs35115732	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35169793	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35261698	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35701831	0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs35999162	0.80[AMR][1000 genomes]
rs3811697	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs3811699	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3870338	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs3924462	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs3926569	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4459909	0.94[ASN][1000 genomes]
rs4625	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs4855839	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4855842	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4855843	0.83[ASN][1000 genomes]
rs4855852	0.88[GIH][hapmap];0.86[JPT][hapmap]
rs4855859	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4855864	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4855873	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4855877	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs55957735	0.92[ASN][1000 genomes]
rs6446264	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6446272	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446274	0.87[ASN][1000 genomes]
rs6446277	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67216675	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67485053	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6766131	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6766581	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6782577	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6784820	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6792911	0.86[ASN][1000 genomes]
rs6793308	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6797664	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6809216	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71324962	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7622302	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7623659	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7630869	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7633271	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7637999	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs7643586	0.86[ASN][1000 genomes]
rs7646366	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7648841	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs885592	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs9811982	1.00[CEU][hapmap]
rs9814873	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818590	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9821311	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9827021	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9827708	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.90[TSI][hapmap]
rs9837027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs9841110	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9850072	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9853683	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9858280	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs9858418	0.85[AMR][1000 genomes]
rs9859556	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9871380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875617	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap]
rs9878943	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs6779524	FAM212A	cis	Muscle Skeletal	GTEx
rs6779524	GPX1	cis	parietal	SCAN
rs6779524	NICN1	cis	cerebellum	SCAN
rs6779524	PARP3	cis	parietal	SCAN
rs6779524	IP6K2	cis	cerebellum	SCAN
rs6779524	KDM5B	trans	lymphoblastoid	seeQTL
rs6779524	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs6779524	RBM6	cis	cerebellum	SCAN
rs6779524	RNF123	cis	parietal	SCAN
rs6779524	CISH	cis	parietal	SCAN
rs6779524	NBEAL2	cis	cerebellum	SCAN
rs6779524	ZNF589	cis	parietal	SCAN
rs6779524	AMT	cis	parietal	SCAN
rs6779524	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs6779524	RNF123	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49447000-49450600	Active TSS	Aorta	Aorta
2	chr3:49447600-49450600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:49448000-49450800	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr3:49449800-49450600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:49449800-49450600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:49449800-49450600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:49449800-49450800	Flanking Active TSS	Primary B cells from peripheral blood	blood
8	chr3:49449800-49450800	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr3:49449800-49450800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:49449800-49450800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:49449800-49451000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr3:49449800-49451000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:49449800-49451000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:49449800-49451200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
15	chr3:49449800-49451200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr3:49449800-49451400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:49449800-49451400	Flanking Active TSS	Colonic Mucosa	Colon
18	chr3:49450000-49450600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:49450000-49450600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:49450000-49450600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr3:49450000-49450600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:49450000-49450600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr3:49450000-49450800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:49450000-49450800	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr3:49450000-49450800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr3:49450000-49450800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:49450000-49450800	Flanking Active TSS	Fetal Thymus	thymus
28	chr3:49450000-49450800	Flanking Active TSS	HUVEC	blood vessel
29	chr3:49450000-49451000	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr3:49450000-49451000	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr3:49450000-49451000	Flanking Active TSS	Fetal Brain Female	brain
32	chr3:49450000-49451000	Flanking Active TSS	Fetal Lung	lung
33	chr3:49450000-49451000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr3:49450000-49451200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:49450000-49451200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr3:49450000-49451200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr3:49450000-49451200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr3:49450000-49451200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:49450000-49451200	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr3:49450000-49451200	Flanking Active TSS	Fetal Brain Male	brain
41	chr3:49450000-49451200	Flanking Active TSS	NH-A	brain
42	chr3:49450200-49450600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:49450200-49450600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr3:49450200-49450600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:49450200-49450600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:49450200-49450600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr3:49450200-49450600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:49450200-49450600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:49450200-49450600	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr3:49450200-49450600	Flanking Active TSS	Dnd41	blood

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