Variant report

Variant	rs35169793
Chromosome Location	chr3:49423274-49423275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1050450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10640	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11706370	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11711485	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11711536	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712569	0.80[AMR][1000 genomes]
rs11713474	0.81[AMR][1000 genomes]
rs11715915	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11716974	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719996	0.83[AMR][1000 genomes]
rs11922013	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12330269	0.83[AMR][1000 genomes]
rs13079082	0.82[AMR][1000 genomes]
rs13079643	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13086611	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087851	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090388	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17595772	0.94[ASN][1000 genomes]
rs17650792	0.94[ASN][1000 genomes]
rs1800668	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801143	0.82[AMR][1000 genomes]
rs1987628	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117939	0.90[ASN][1000 genomes]
rs2878298	0.94[ASN][1000 genomes]
rs34196454	0.80[AMR][1000 genomes]
rs34293138	0.83[AMR][1000 genomes]
rs34363169	0.83[AMR][1000 genomes]
rs34588335	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35115732	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35261698	0.85[AMR][1000 genomes]
rs3811697	0.81[AMR][1000 genomes]
rs3811699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3926569	0.82[AMR][1000 genomes]
rs4625	0.82[AMR][1000 genomes]
rs4955412	0.94[ASN][1000 genomes]
rs4955438	0.82[ASN][1000 genomes]
rs62259939	0.94[ASN][1000 genomes]
rs62259942	0.83[ASN][1000 genomes]
rs6446264	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446272	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6446277	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67216675	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67485053	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766131	0.85[AMR][1000 genomes]
rs6766581	0.83[AMR][1000 genomes]
rs6779524	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6792911	0.82[ASN][1000 genomes]
rs6793308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797664	0.83[AMR][1000 genomes]
rs6797765	0.94[ASN][1000 genomes]
rs6809216	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71324962	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7373849	0.87[ASN][1000 genomes]
rs7621003	0.94[ASN][1000 genomes]
rs7622302	0.81[AMR][1000 genomes]
rs7623659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631908	0.88[ASN][1000 genomes]
rs7633271	0.82[AMR][1000 genomes]
rs7643586	0.82[ASN][1000 genomes]
rs7646366	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648841	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814873	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9818590	0.85[AMR][1000 genomes]
rs9821311	0.85[AMR][1000 genomes]
rs9827021	0.85[AMR][1000 genomes]
rs9837027	0.81[AMR][1000 genomes]
rs9841110	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9850072	0.83[AMR][1000 genomes]
rs9853683	0.83[AMR][1000 genomes]
rs9858280	0.81[AMR][1000 genomes]
rs9858418	0.82[AMR][1000 genomes]
rs9859556	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9871380	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9878943	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35169793	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs35169793	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs35169793	FAM212A	cis	Muscle Skeletal	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:49397200-49423800	Weak transcription	Fetal Heart	heart
3	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:49406000-49445200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:49411000-49434600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:49411200-49423800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:49413000-49423800	Weak transcription	HUVEC	blood vessel
8	chr3:49413200-49425400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:49413200-49425600	Weak transcription	Hela-S3	cervix
10	chr3:49413200-49431800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:49413200-49432000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:49413200-49432000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:49413200-49432000	Weak transcription	Fetal Kidney	kidney
14	chr3:49413200-49433200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:49413200-49435000	Weak transcription	Brain Angular Gyrus	brain
16	chr3:49413200-49441400	Weak transcription	Aorta	Aorta
17	chr3:49413200-49443000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:49413200-49447400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:49413400-49425400	Weak transcription	Thymus	Thymus
20	chr3:49413400-49425400	Weak transcription	Dnd41	blood
21	chr3:49413400-49425600	Weak transcription	Fetal Intestine Large	intestine
22	chr3:49413400-49431800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:49413400-49433600	Weak transcription	Brain Germinal Matrix	brain
24	chr3:49413400-49439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:49413600-49430600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:49413600-49432000	Weak transcription	Fetal Lung	lung
27	chr3:49413600-49433200	Weak transcription	Colonic Mucosa	Colon
28	chr3:49413600-49441000	Weak transcription	Fetal Brain Female	brain
29	chr3:49413800-49425600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:49414600-49424400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr3:49414600-49424400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:49414800-49424200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr3:49415800-49425400	Weak transcription	Fetal Thymus	thymus
34	chr3:49416200-49423600	Weak transcription	Liver	Liver
35	chr3:49416200-49425400	Weak transcription	Spleen	Spleen
36	chr3:49416200-49430400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr3:49416200-49431800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:49416200-49433200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:49416200-49435200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr3:49416400-49425400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:49416400-49425400	Weak transcription	Fetal Intestine Small	intestine
42	chr3:49416400-49425400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr3:49416400-49425800	Weak transcription	NHLF	lung
44	chr3:49416400-49429400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr3:49416400-49432200	Weak transcription	Placenta	Placenta
46	chr3:49416800-49425000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr3:49416800-49425600	Weak transcription	NH-A	brain
48	chr3:49417200-49425600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:49417400-49425000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:49417600-49425000	Weak transcription	Fetal Muscle Leg	muscle

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