Variant report

Variant	rs3811697
Chromosome Location	chr3:49590770-49590771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr3:49590533-49590847	K562	blood:	n/a	chr3:49590696-49590709 chr3:49590720-49590731 chr3:49590718-49590731
2	CEBPB	chr3:49590627-49591233	A549	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
3	CEBPB	chr3:49590681-49591121	MCF-7	breast:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
4	REST	chr3:49590593-49593431	HL-60	blood:	n/a	chr3:49591201-49591211 chr3:49590761-49590779 chr3:49592639-49592653 chr3:49590764-49590777 chr3:49592634-49592652 chr3:49592633-49592653 chr3:49592633-49592653
5	SPI1	chr3:49590570-49590778	K562	blood:	n/a	chr3:49590699-49590708
6	SPI1	chr3:49590583-49590815	GM12891	blood:	n/a	chr3:49590699-49590708
7	CEBPB	chr3:49590673-49591186	ECC-1	luminal epithelium:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
8	CEBPB	chr3:49590732-49591137	Hela-S3	cervix:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
9	CEBPB	chr3:49590721-49591119	K562	blood:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
10	SPI1	chr3:49590638-49590918	HL-60	blood:	n/a	chr3:49590699-49590708
11	CEBPB	chr3:49590741-49591116	A549	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
12	CEBPB	chr3:49590716-49591152	ECC-1	luminal epithelium:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
13	CEBPB	chr3:49590694-49591147	K562	blood:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
14	SPI1	chr3:49590555-49590978	HL-60	blood:	n/a	chr3:49590699-49590708
15	RCOR1	chr3:49590681-49592523	IMR90	lung:	n/a	n/a
16	CEBPB	chr3:49590737-49591186	MCF-7	breast:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
17	CEBPB	chr3:49590746-49591119	HepG2	liver:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
18	CEBPB	chr3:49590748-49591122	H1-hESC	embryonic stem cell:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
19	CEBPB	chr3:49590737-49591129	IMR90	lung:	n/a	chr3:49590925-49590934 chr3:49590923-49590934
20	CEBPB	chr3:49590729-49591099	HepG2	liver:	n/a	chr3:49590925-49590934 chr3:49590923-49590934

No.	Distal block	Cell Line	Cell type
1	chr3:49590547..49592695-chr3:49709214..49711684,3	MCF-7	breast:
2	chr3:49588932..49590951-chr3:49710802..49712975,2	K562	blood:
3	chr3:49582614..49585275-chr3:49588937..49591341,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NICN1-1	chr3:49590374-49591536	NONHSAT089709

Variant related genes	Relation type
BSN	TF binding region
ENSG00000164062	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10212296	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1050088	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1050450	0.81[AMR][1000 genomes]
rs1060962	0.85[GIH][hapmap]
rs10640	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs10865955	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11130192	1.00[JPT][hapmap]
rs11130199	0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11130202	0.94[ASN][1000 genomes]
rs11130203	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130206	0.84[ASN][1000 genomes]
rs11130213	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs1131095	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs11706370	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11708955	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11709525	1.00[CEU][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap]
rs11711485	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11712569	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11713474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11715915	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes]
rs11716974	0.82[AMR][1000 genomes]
rs11718165	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs11719996	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11720264	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11720458	0.86[ASN][1000 genomes]
rs11720597	0.91[EUR][1000 genomes]
rs11919311	0.88[GIH][hapmap];0.86[JPT][hapmap]
rs11922013	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11926781	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12330269	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488065	0.88[ASN][1000 genomes]
rs12489092	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13062429	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13064576	0.89[EUR][1000 genomes]
rs13079082	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079643	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13085791	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs13090388	0.81[AMR][1000 genomes]
rs1464566	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1464567	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1464568	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1568661	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17080528	0.81[AMR][1000 genomes]
rs1800668	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1801143	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873625	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap]
rs1873626	0.86[JPT][hapmap]
rs1987628	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2131104	0.85[GIH][hapmap]
rs2131109	0.85[GIH][hapmap]
rs2172252	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs2312461	0.94[ASN][1000 genomes]
rs2329020	0.85[GIH][hapmap];0.86[JPT][hapmap]
rs3197999	0.95[CEU][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap]
rs34196454	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34293138	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34363169	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427167	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34588335	0.81[AMR][1000 genomes]
rs34762726	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap]
rs35115732	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35169793	0.81[AMR][1000 genomes]
rs35261698	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35701831	0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs35999162	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3811699	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs3870337	0.94[ASN][1000 genomes]
rs3870338	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3877784	0.94[ASN][1000 genomes]
rs3924462	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3926569	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4241406	0.86[ASN][1000 genomes]
rs4283605	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap]
rs4625	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4855836	0.94[ASN][1000 genomes]
rs4855839	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4855842	1.00[JPT][hapmap]
rs4855852	0.88[GIH][hapmap];0.86[JPT][hapmap]
rs4855855	0.85[ASN][1000 genomes]
rs4855859	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4855861	0.94[ASN][1000 genomes]
rs4855864	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4855866	0.80[ASN][1000 genomes]
rs4855873	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4855877	1.00[JPT][hapmap]
rs4855881	0.85[GIH][hapmap];0.86[JPT][hapmap]
rs4855884	0.85[GIH][hapmap]
rs56116382	0.87[ASN][1000 genomes]
rs62261185	0.81[ASN][1000 genomes]
rs6446272	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes]
rs6446277	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67216675	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6766131	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6766581	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770670	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs6779524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs6782577	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6784820	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs6793308	0.81[AMR][1000 genomes]
rs6797664	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803222	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs6809216	0.81[AMR][1000 genomes]
rs6997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs71324962	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71615484	0.96[ASN][1000 genomes]
rs7371895	0.82[ASN][1000 genomes]
rs7622302	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623659	0.81[AMR][1000 genomes]
rs7630869	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7633271	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637999	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7643845	0.94[ASN][1000 genomes]
rs7646366	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs885592	0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9811982	1.00[CEU][hapmap]
rs9812791	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap]
rs9814873	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes]
rs9818590	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821311	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9822268	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.87[TSI][hapmap]
rs9823546	1.00[CEU][hapmap]
rs9827021	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827708	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap]
rs9837027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9837341	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9841110	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9850072	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853683	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858213	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[MEX][hapmap]
rs9858280	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9858418	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9858542	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs9859556	0.82[AMR][1000 genomes]
rs9871380	0.83[AMR][1000 genomes]
rs9875617	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes]
rs9878943	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs9882740	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3325224	chr3:49590473-49593321	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs3811697	RNF123	cis	cerebellum	SCAN
rs3811697	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs3811697	RNF123	cis	parietal	SCAN
rs3811697	KDM5B	trans	lymphoblastoid	seeQTL
rs3811697	IP6K2	cis	cerebellum	SCAN
rs3811697	NICN1	cis	cerebellum	SCAN
rs3811697	ZNF589	cis	parietal	SCAN
rs3811697	FAM212A	cis	Muscle Skeletal	GTEx
rs3811697	CISH	cis	parietal	SCAN
rs3811697	AMT	cis	parietal	SCAN
rs3811697	PARP3	cis	parietal	SCAN
rs3811697	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs3811697	RBM6	cis	cerebellum	SCAN
rs3811697	GPX1	cis	parietal	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49586000-49590800	Weak transcription	Right Ventricle	heart
2	chr3:49588200-49590800	Weak transcription	HUVEC	blood vessel
3	chr3:49588200-49591000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:49588800-49591000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:49589000-49591200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:49589400-49590800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:49589400-49590800	Weak transcription	Fetal Intestine Large	intestine
8	chr3:49589400-49591200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr3:49589600-49591200	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:49589800-49590800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:49589800-49591000	Enhancers	Lung	lung
12	chr3:49590200-49590800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:49590200-49590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:49590400-49590800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr3:49590400-49590800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:49590400-49590800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:49590400-49590800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:49590400-49590800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:49590400-49590800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:49590400-49590800	Enhancers	Stomach Smooth Muscle	stomach
21	chr3:49590400-49591000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:49590400-49591000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:49590400-49591000	Enhancers	Fetal Kidney	kidney
24	chr3:49590400-49591000	Enhancers	Fetal Muscle Leg	muscle
25	chr3:49590400-49591000	Enhancers	Pancreas	Pancrea
26	chr3:49590400-49591000	Enhancers	K562	blood
27	chr3:49590400-49591200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
28	chr3:49590400-49591400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:49590400-49591400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr3:49590600-49590800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr3:49590600-49590800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:49590600-49590800	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr3:49590600-49590800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:49590600-49590800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
35	chr3:49590600-49590800	Enhancers	Liver	Liver
36	chr3:49590600-49590800	Enhancers	Brain Hippocampus Middle	brain
37	chr3:49590600-49590800	Enhancers	Brain Substantia Nigra	brain
38	chr3:49590600-49590800	Enhancers	Gastric	stomach
39	chr3:49590600-49591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr3:49590600-49591000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr3:49590600-49591000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:49590600-49591000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:49590600-49591000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:49590600-49591000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:49590600-49591000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr3:49590600-49591000	Enhancers	Adipose Nuclei	Adipose
47	chr3:49590600-49591000	Enhancers	Colon Smooth Muscle	Colon
48	chr3:49590600-49591000	Enhancers	Duodenum Mucosa	Duodenum
49	chr3:49590600-49591000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
50	chr3:49590600-49591000	Enhancers	Fetal Brain Male	brain

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