Variant report

Variant	rs9811982
Chromosome Location	chr3:49624377-49624378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10212296	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1050088	0.82[ASN][1000 genomes]
rs10640	1.00[CEU][hapmap]
rs11130199	0.82[ASN][1000 genomes]
rs11130202	0.82[ASN][1000 genomes]
rs11130203	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130213	1.00[CEU][hapmap]
rs1131095	1.00[CEU][hapmap]
rs11706370	1.00[CEU][hapmap]
rs11708955	0.89[EUR][1000 genomes]
rs11709525	1.00[CEU][hapmap]
rs11711485	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11712569	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11713474	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11715915	1.00[CEU][hapmap]
rs11718165	1.00[CEU][hapmap]
rs11719996	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720264	0.82[ASN][1000 genomes]
rs11720458	0.90[ASN][1000 genomes]
rs11720597	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11922013	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11926781	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12330269	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12489092	0.82[ASN][1000 genomes]
rs12636099	0.80[ASN][1000 genomes]
rs13062429	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13064576	0.89[EUR][1000 genomes]
rs13079082	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13079643	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13085791	1.00[CEU][hapmap]
rs1568661	0.82[ASN][1000 genomes]
rs1801143	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1873625	1.00[CEU][hapmap]
rs2172252	1.00[CEU][hapmap]
rs2312461	0.82[ASN][1000 genomes]
rs3197999	0.95[CEU][hapmap]
rs34196454	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34293138	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34363169	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34427167	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34762726	1.00[CEU][hapmap]
rs35115732	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35261698	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35701831	0.82[ASN][1000 genomes]
rs35999162	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811697	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3870337	0.82[ASN][1000 genomes]
rs3870338	0.82[ASN][1000 genomes]
rs3877784	0.82[ASN][1000 genomes]
rs3924462	0.82[ASN][1000 genomes]
rs3926569	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4241406	0.90[ASN][1000 genomes]
rs4283605	1.00[CEU][hapmap]
rs4625	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4855836	0.82[ASN][1000 genomes]
rs4855859	0.82[ASN][1000 genomes]
rs4855861	0.82[ASN][1000 genomes]
rs4855864	0.82[ASN][1000 genomes]
rs56116382	0.91[ASN][1000 genomes]
rs6446272	0.94[CEU][hapmap];0.81[AMR][1000 genomes]
rs6446277	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67216675	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6766131	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6766581	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6770670	1.00[CEU][hapmap]
rs6779524	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs6787417	0.88[ASN][1000 genomes]
rs6797664	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803222	1.00[CEU][hapmap]
rs6997	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs71324962	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71615484	0.84[ASN][1000 genomes]
rs7622302	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7630869	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7633271	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637999	0.82[ASN][1000 genomes]
rs7643845	0.82[ASN][1000 genomes]
rs7646366	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9812791	1.00[CEU][hapmap]
rs9814873	1.00[CEU][hapmap]
rs9818590	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9821311	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9822268	1.00[CEU][hapmap]
rs9823546	1.00[CEU][hapmap]
rs9827021	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9827708	1.00[CEU][hapmap]
rs9837027	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9837341	1.00[CEU][hapmap]
rs9841110	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9850072	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9853683	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9858213	0.89[CEU][hapmap]
rs9858280	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9858418	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9858542	1.00[CEU][hapmap]
rs9871380	0.81[AMR][1000 genomes]
rs9875617	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9878943	0.81[AMR][1000 genomes]
rs9882740	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9811982	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs9811982	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs9811982	FAM212A	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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