Variant report

Variant	rs34588335
Chromosome Location	chr3:49407660-49407661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49406483..49409240-chr3:49424469..49426379,2	K562	blood:
2	chr3:49406633..49409699-chr3:49449067..49451107,3	K562	blood:

Variant related genes	Relation type
ENSG00000067560	Chromatin interaction
ENSG00000145022	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1050450	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10640	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11706370	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11711485	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11711536	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11712569	0.80[AMR][1000 genomes]
rs11713474	0.81[AMR][1000 genomes]
rs11715915	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11716974	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719996	0.83[AMR][1000 genomes]
rs11922013	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12330269	0.83[AMR][1000 genomes]
rs13079082	0.82[AMR][1000 genomes]
rs13079643	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13086611	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087851	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17595772	0.94[ASN][1000 genomes]
rs17650792	0.94[ASN][1000 genomes]
rs1800668	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801143	0.82[AMR][1000 genomes]
rs1987628	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117939	0.90[ASN][1000 genomes]
rs2878298	0.94[ASN][1000 genomes]
rs34196454	0.80[AMR][1000 genomes]
rs34293138	0.83[AMR][1000 genomes]
rs34363169	0.83[AMR][1000 genomes]
rs35115732	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35169793	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35261698	0.85[AMR][1000 genomes]
rs3811697	0.81[AMR][1000 genomes]
rs3811699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3926569	0.82[AMR][1000 genomes]
rs4625	0.82[AMR][1000 genomes]
rs4955412	0.94[ASN][1000 genomes]
rs4955438	0.82[ASN][1000 genomes]
rs62259939	0.94[ASN][1000 genomes]
rs62259942	0.83[ASN][1000 genomes]
rs6446264	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446272	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6446277	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67216675	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67485053	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6766131	0.85[AMR][1000 genomes]
rs6766581	0.83[AMR][1000 genomes]
rs6779524	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6792911	0.82[ASN][1000 genomes]
rs6793308	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797664	0.83[AMR][1000 genomes]
rs6797765	0.94[ASN][1000 genomes]
rs6809216	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71324962	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7373849	0.87[ASN][1000 genomes]
rs7621003	0.94[ASN][1000 genomes]
rs7622302	0.81[AMR][1000 genomes]
rs7623659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7631908	0.88[ASN][1000 genomes]
rs7633271	0.82[AMR][1000 genomes]
rs7643586	0.82[ASN][1000 genomes]
rs7646366	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7648841	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814873	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9818590	0.85[AMR][1000 genomes]
rs9821311	0.85[AMR][1000 genomes]
rs9827021	0.85[AMR][1000 genomes]
rs9837027	0.81[AMR][1000 genomes]
rs9841110	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9850072	0.83[AMR][1000 genomes]
rs9853683	0.83[AMR][1000 genomes]
rs9858280	0.81[AMR][1000 genomes]
rs9858418	0.82[AMR][1000 genomes]
rs9859556	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9871380	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9878943	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs34588335	IHPK2	Cis_1M	lymphoblastoid	RTeQTL
rs34588335	RBM6	Cis_1M	lymphoblastoid	RTeQTL
rs34588335	FAM212A	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49396400-49413600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:49396400-49418600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:49396600-49410200	Weak transcription	Psoas Muscle	Psoas
4	chr3:49396600-49413200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:49396600-49413200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr3:49396600-49413800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr3:49396600-49414400	Weak transcription	Fetal Brain Male	brain
8	chr3:49396800-49408000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr3:49396800-49410800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:49396800-49412800	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:49396800-49413200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:49396800-49413400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:49396800-49413400	Strong transcription	Thymus	Thymus
14	chr3:49396800-49413600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:49396800-49438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:49397000-49408000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:49397000-49412800	Strong transcription	Lung	lung
18	chr3:49397000-49413000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:49397000-49413200	Strong transcription	Adipose Nuclei	Adipose
20	chr3:49397000-49415200	Strong transcription	Fetal Stomach	stomach
21	chr3:49397200-49413400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:49397200-49423800	Weak transcription	Fetal Heart	heart
23	chr3:49397400-49410400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:49397400-49410600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:49397400-49411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:49397400-49413200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:49397400-49413200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:49397400-49413400	Strong transcription	Fetal Intestine Large	intestine
29	chr3:49397400-49413400	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:49397400-49413400	Strong transcription	Placenta	Placenta
31	chr3:49397400-49416400	Strong transcription	Fetal Intestine Small	intestine
32	chr3:49397600-49413200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr3:49397600-49413200	Strong transcription	Spleen	Spleen
34	chr3:49397600-49413600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:49397800-49409000	Weak transcription	Fetal Kidney	kidney
36	chr3:49397800-49413200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:49397800-49413600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:49397800-49413800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:49397800-49415800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:49398800-49410600	Weak transcription	Small Intestine	intestine
41	chr3:49399000-49448000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:49400600-49413200	Strong transcription	Primary T cells from cord blood	blood
43	chr3:49400800-49413600	Strong transcription	Fetal Thymus	thymus
44	chr3:49401200-49413200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:49401200-49413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:49401400-49410800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr3:49401400-49413800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:49401600-49407800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:49401600-49408000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr3:49401600-49409200	Weak transcription	Right Ventricle	heart

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