Variant report

Variant	rs2913883
Chromosome Location	chr5:151276657-151276658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151275299..151277961-chr5:151280743..151282793,2	K562	blood:
2	chr5:151275869..151278648-chr5:151283892..151285683,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10036616	0.94[CEU][hapmap]
rs10059511	0.94[CEU][hapmap]
rs10062143	0.95[CEU][hapmap]
rs10066997	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10074267	0.94[CEU][hapmap]
rs10074385	0.93[CEU][hapmap]
rs10075210	0.94[CEU][hapmap]
rs10079457	0.94[CEU][hapmap];0.82[CHB][hapmap];0.87[EUR][1000 genomes]
rs10477000	0.94[CEU][hapmap]
rs11956353	0.94[CEU][hapmap]
rs28633110	0.86[EUR][1000 genomes]
rs2913880	0.88[EUR][1000 genomes]
rs2913886	0.88[EUR][1000 genomes]
rs2913890	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2964602	0.88[EUR][1000 genomes]
rs3812003	0.94[CEU][hapmap]
rs3812004	0.94[CEU][hapmap]
rs6876258	0.94[CEU][hapmap]
rs6881068	0.94[CEU][hapmap]
rs6898736	0.94[CEU][hapmap]
rs7356721	0.94[CEU][hapmap]
rs73794753	0.86[EUR][1000 genomes]
rs7709656	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9324715	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2913883	LOC729421	cis	intralobular white matter	BrainEAC
rs2913883	LOC729421	cis	brain	BrainEAC

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151271000-151280400	Weak transcription	Fetal Heart	heart
2	chr5:151275000-151276800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:151275000-151278000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:151275000-151278200	Enhancers	HMEC	breast
5	chr5:151275000-151281400	Enhancers	NHDF-Ad	bronchial
6	chr5:151275200-151276800	Enhancers	Fetal Lung	lung
7	chr5:151275200-151277000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:151275200-151277800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:151275200-151278000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:151275400-151277600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:151275400-151277800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:151275800-151276800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:151275800-151277200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:151275800-151277200	Weak transcription	NHLF	lung
15	chr5:151275800-151278000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:151275800-151278400	Enhancers	HSMM	muscle
17	chr5:151275800-151279000	Weak transcription	Right Atrium	heart
18	chr5:151275800-151280200	Weak transcription	Aorta	Aorta
19	chr5:151275800-151280800	Weak transcription	Left Ventricle	heart
20	chr5:151276000-151276800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:151276000-151279800	Weak transcription	Fetal Stomach	stomach
22	chr5:151276000-151280200	Weak transcription	Ovary	ovary
23	chr5:151276200-151276800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:151276200-151278000	Enhancers	NHEK	skin
25	chr5:151276200-151280200	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:151276400-151278600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:151276400-151285200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:151276600-151276800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr5:151276600-151276800	Enhancers	NH-A	brain
30	chr5:151276600-151279400	Weak transcription	HSMMtube	muscle
31	chr5:151276600-151279600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr5:151276600-151285200	Weak transcription	Fetal Muscle Leg	muscle

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