The 2.0 version of rSNPBase

Variant report

Variant rs3013453
Chromosome Location chr1:214546859-214546860
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214513600-214552200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:214519000-214557800 Weak transcription Dnd41 blood
3 chr1:214519200-214577200 Weak transcription Primary hematopoietic stem cells blood
4 chr1:214522800-214552800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:214524400-214574400 Weak transcription Brain Hippocampus Middle brain
6 chr1:214528600-214552800 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:214528600-214555800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:214528800-214551800 Strong transcription HUES64 Cell Line embryonic stem cell
9 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
10 chr1:214529400-214561800 Weak transcription Brain Angular Gyrus brain
11 chr1:214531600-214556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr1:214534000-214557000 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:214536200-214551000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:214537600-214577000 Weak transcription Stomach Mucosa stomach
15 chr1:214537800-214547400 Weak transcription Colon Smooth Muscle Colon
16 chr1:214537800-214549000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:214538000-214556200 Weak transcription Duodenum Mucosa Duodenum
18 chr1:214538000-214556400 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr1:214538000-214559400 Weak transcription Small Intestine intestine
20 chr1:214538200-214556600 Weak transcription Pancreas Pancrea
21 chr1:214538600-214550600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:214538800-214549400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:214538800-214556400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
24 chr1:214539600-214561600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:214539800-214551000 Strong transcription NHDF-Ad bronchial
26 chr1:214540200-214547600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:214540400-214548400 Strong transcription NHEK skin
28 chr1:214540400-214552000 Strong transcription HUVEC blood vessel
29 chr1:214540600-214549200 Strong transcription HMEC breast
30 chr1:214540600-214549400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:214540800-214547200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:214540800-214547200 Strong transcription Fetal Stomach stomach
33 chr1:214540800-214547400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:214541200-214552200 Weak transcription H9 Cell Line embryonic stem cell
35 chr1:214541600-214566600 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr1:214542000-214556200 Weak transcription Brain Cingulate Gyrus brain
37 chr1:214542200-214551000 Strong transcription HSMM muscle
38 chr1:214542400-214549800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:214542400-214549800 Strong transcription Placenta Placenta
40 chr1:214543200-214548200 Strong transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:214543200-214556400 Weak transcription HepG2 liver
42 chr1:214543600-214561600 Weak transcription Colonic Mucosa Colon
43 chr1:214544000-214548200 Genic enhancers Breast Myoepithelial Primary Cells Breast
44 chr1:214544200-214556000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:214544600-214548000 Strong transcription ES-I3 Cell Line embryonic stem cell
46 chr1:214544800-214549000 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr1:214545000-214547600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr1:214545000-214549200 Weak transcription Spleen Spleen
49 chr1:214545000-214549800 Strong transcription HUES48 Cell Line embryonic stem cell
50 chr1:214545000-214550600 Weak transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015