Variant report

Variant	rs34214527
Chromosome Location	chr6:32014456-32014457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:32013674-32014749	K562	blood:	n/a	n/a
2	POLR2A	chr6:32013867-32016887	HepG2	liver:	n/a	n/a
3	RCOR1	chr6:32014223-32015205	Hela-S3	cervix:	n/a	n/a
4	GTF2F1	chr6:32014352-32015123	Hela-S3	cervix:	n/a	n/a
5	MAZ	chr6:32013513-32015192	K562	blood:	n/a	chr6:32014411-32014421 chr6:32013598-32013607 chr6:32015046-32015055 chr6:32014984-32014993
6	CEBPB	chr6:32014177-32015205	Hela-S3	cervix:	n/a	n/a
7	ELK1	chr6:32014422-32014820	Hela-S3	cervix:	n/a	n/a
8	TFAP2A	chr6:32014067-32016023	Hela-S3	cervix:	n/a	chr6:32015046-32015055
9	SMARCC1	chr6:32014047-32015354	Hela-S3	cervix:	n/a	n/a
10	UBTF	chr6:32014279-32014470	K562	blood:	n/a	n/a
11	JUN	chr6:32013534-32015532	K562	blood:	n/a	chr6:32014985-32014996 chr6:32015048-32015055 chr6:32015047-32015055 chr6:32013596-32013608 chr6:32013598-32013606 chr6:32015045-32015057 chr6:32015047-32015055 chr6:32014983-32014992
12	TCF7L2	chr6:32014126-32015375	Hela-S3	cervix:	n/a	chr6:32014983-32014992
13	FOXP2	chr6:32014372-32014586	SK-N-MC	brain:	n/a	n/a
14	STAT3	chr6:32014196-32014482	MCF10A-Er-Src	breast:	n/a	chr6:32014311-32014322
15	BHLHE40	chr6:32013765-32014659	K562	blood:	n/a	n/a
16	E2F6	chr6:32014123-32014470	H1-hESC	embryonic stem cell:	n/a	chr6:32014245-32014256
17	MAX	chr6:32014074-32014558	A549	lung:	n/a	chr6:32014411-32014421
18	MAZ	chr6:32014097-32015284	Hela-S3	cervix:	n/a	chr6:32014411-32014421 chr6:32015046-32015055 chr6:32014984-32014993
19	E2F6	chr6:32013943-32014542	Hela-S3	cervix:	n/a	chr6:32014483-32014490 chr6:32014245-32014256
20	ZNF263	chr6:32013913-32014611	HEK293-T-REx	kidney:	n/a	chr6:32014415-32014424 chr6:32014234-32014255
21	CBX3	chr6:32012704-32014465	K562	blood:	n/a	n/a
22	RCOR1	chr6:32013637-32014727	K562	blood:	n/a	n/a
23	MAX	chr6:32014090-32014530	ECC-1	luminal epithelium:	n/a	chr6:32014411-32014421
24	MAX	chr6:32014094-32015303	Hela-S3	cervix:	n/a	chr6:32014411-32014421 chr6:32015046-32015055 chr6:32014984-32014993
25	POLR2A	chr6:32011682-32014547	K562	blood:	n/a	n/a
26	NR2F2	chr6:32014203-32015050	K562	blood:	n/a	n/a
27	SMC3	chr6:32014068-32015271	Hela-S3	cervix:	n/a	chr6:32014740-32014750 chr6:32014708-32014722
28	MAX	chr6:32014141-32014492	A549	lung:	n/a	chr6:32014411-32014421
29	MYC	chr6:32014295-32014460	MCF10A-Er-Src	breast:	n/a	chr6:32014411-32014421
30	RCOR1	chr6:32013505-32015171	K562	blood:	n/a	n/a
31	RAD21	chr6:32014250-32015255	Hela-S3	cervix:	n/a	chr6:32015065-32015074
32	MAX	chr6:32013605-32014779	K562	blood:	n/a	chr6:32014411-32014421
33	CHD2	chr6:32014382-32015277	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:32014410-32015094	Hela-S3	cervix:	n/a	n/a
35	TFAP2C	chr6:32014034-32016138	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr6:32014171-32014545	Hela-S3	cervix:	n/a	n/a
37	E2F6	chr6:32013502-32014567	K562	blood:	n/a	chr6:32014483-32014490 chr6:32014245-32014256
38	E2F6	chr6:32013985-32014589	H1-hESC	embryonic stem cell:	n/a	chr6:32014483-32014490 chr6:32014245-32014256
39	ARID3A	chr6:32014416-32014548	K562	blood:	n/a	n/a
40	JUND	chr6:32013492-32015232	K562	blood:	n/a	chr6:32014985-32014996 chr6:32015048-32015055 chr6:32015047-32015055 chr6:32015045-32015056 chr6:32013596-32013608 chr6:32013598-32013606 chr6:32015045-32015057 chr6:32015047-32015055 chr6:32014983-32014992
41	ZMIZ1	chr6:32014425-32014601	K562	blood:	n/a	n/a
42	MAX	chr6:32013520-32014823	K562	blood:	n/a	chr6:32014411-32014421 chr6:32013598-32013607
43	HMGN3	chr6:32013732-32014911	K562	blood:	n/a	n/a
44	SMARCB1	chr6:32014183-32015270	Hela-S3	cervix:	n/a	n/a
45	FOXP2	chr6:32014233-32014692	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31830409..31832412-chr6:32014093..32016041,2	K562	blood:
2	chr6:31830912..31833686-chr6:32013315..32015593,2	K562	blood:
3	chr6:31631447..31633355-chr6:32013677..32016476,2	K562	blood:
4	chr6:31938465..31944613-chr6:32012205..32018958,7	K562	blood:
5	chr6:31938465..31941001-chr6:32013795..32015947,2	K562	blood:
6	chr6:32013434..32015953-chr6:32095466..32097702,3	K562	blood:
7	chr6:31928405..31931072-chr6:32014405..32017248,2	K562	blood:

Variant related genes	Relation type
TNXB	TF binding region
ENSG00000204385	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000204386	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12153855	0.87[ASN][1000 genomes]
rs12196385	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12198173	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211410	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12213851	0.83[ASN][1000 genomes]
rs12215107	0.83[ASN][1000 genomes]
rs13199524	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13211318	0.83[ASN][1000 genomes]
rs204884	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2077580	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395099	0.84[ASN][1000 genomes]
rs28732174	0.83[ASN][1000 genomes]
rs28732176	0.83[ASN][1000 genomes]
rs3096689	0.83[ASN][1000 genomes]
rs3096697	0.83[ASN][1000 genomes]
rs3130277	0.87[ASN][1000 genomes]
rs3130281	0.83[ASN][1000 genomes]
rs3130284	0.83[ASN][1000 genomes]
rs3130347	0.83[ASN][1000 genomes]
rs3130348	0.83[ASN][1000 genomes]
rs3131297	0.83[ASN][1000 genomes]
rs3132965	0.83[ASN][1000 genomes]
rs3134608	0.83[ASN][1000 genomes]
rs3134941	0.91[ASN][1000 genomes]
rs3134944	0.83[ASN][1000 genomes]
rs3134945	0.83[ASN][1000 genomes]
rs3134946	0.83[ASN][1000 genomes]
rs3134947	0.83[ASN][1000 genomes]
rs3134951	0.83[ASN][1000 genomes]
rs3134952	0.83[ASN][1000 genomes]
rs6904786	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
2	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
3	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
4	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
5	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
7	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
8	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
9	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
10	nsv427751	chr6:31871512-32092843	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
11	nsv428141	chr6:31871512-32092843	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
12	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
13	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
14	nsv884513	chr6:31922575-32066025	Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
15	nsv5247	chr6:31925739-32023216	Transcr. at gene 5' and 3' Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
16	nsv884517	chr6:31931673-32057627	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
17	nsv538190	chr6:31932347-32037290	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
18	nsv601971	chr6:31939265-32014456	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
19	nsv884522	chr6:31943534-32014456	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
20	esv3360095	chr6:31944273-32014622	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
21	nsv884526	chr6:31947460-32014456	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
22	nsv884543	chr6:31947594-32014456	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
23	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
24	esv1844032	chr6:31948557-32017099	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
25	nsv981129	chr6:31948769-32025638	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
26	nsv884558	chr6:31949352-32014456	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
27	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
28	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
29	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
30	esv1849609	chr6:31949382-32014461	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
31	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
32	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
33	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
34	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
35	nsv884594	chr6:31952422-32014456	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
36	nsv884595	chr6:31952422-32018369	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
37	nsv884596	chr6:31952422-32018888	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
38	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
39	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
40	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
41	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
42	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
43	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
44	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
45	nsv884605	chr6:31955572-32014456	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
46	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
47	nsv884610	chr6:31956424-32014456	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
48	nsv884611	chr6:31956424-32017540	Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
49	nsv884612	chr6:31956424-32019769	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
50	nsv884613	chr6:31956424-32026808	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34214527	HCP5	cis	lymphoblastoid	seeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32006200-32016000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr6:32008800-32035200	Weak transcription	Aorta	Aorta
3	chr6:32012800-32014800	Weak transcription	Gastric	stomach
4	chr6:32013000-32015600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:32013600-32014600	Strong transcription	Placenta Amnion	Placenta Amnion
6	chr6:32013600-32015000	Genic enhancers	Fetal Stomach	stomach
7	chr6:32013600-32015400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:32013600-32017600	Genic enhancers	Fetal Muscle Trunk	muscle
9	chr6:32013600-32022600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:32013800-32015000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:32013800-32015800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:32013800-32015800	Enhancers	NH-A	brain
13	chr6:32013800-32016000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:32013800-32016200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:32013800-32016200	Enhancers	NHDF-Ad	bronchial
16	chr6:32013800-32016400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:32013800-32016600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:32013800-32016600	Enhancers	Esophagus	oesophagus
19	chr6:32013800-32017200	Genic enhancers	Fetal Muscle Leg	muscle
20	chr6:32014000-32014600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:32014000-32014800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:32014000-32014800	Enhancers	Fetal Intestine Large	intestine
23	chr6:32014000-32014800	Enhancers	Right Atrium	heart
24	chr6:32014000-32015000	Enhancers	Fetal Brain Male	brain
25	chr6:32014000-32015200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:32014000-32015400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:32014000-32015600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:32014000-32015800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:32014000-32016000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:32014000-32016000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:32014000-32016000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:32014000-32016000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:32014000-32016000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:32014000-32016400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:32014000-32016400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:32014000-32016400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:32014000-32016400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:32014000-32016400	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:32014000-32016400	Enhancers	Left Ventricle	heart
40	chr6:32014000-32016400	Strong transcription	Lung	lung
41	chr6:32014000-32016400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:32014000-32016600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:32014000-32016600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:32014000-32016600	Enhancers	Brain Substantia Nigra	brain
45	chr6:32014000-32016600	Enhancers	Ovary	ovary
46	chr6:32014000-32016600	Enhancers	Right Ventricle	heart
47	chr6:32014000-32016800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:32014000-32017000	Enhancers	Colon Smooth Muscle	Colon
49	chr6:32014200-32014600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:32014200-32014600	Flanking Active TSS	Brain Hippocampus Middle	brain

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