Variant report

Variant	rs12211410
Chromosome Location	chr6:32049423-32049424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:122)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:32049419-32049749	MCF10A-Er-Src	breast:	n/a	chr6:32049575-32049583 chr6:32049573-32049584
2	MAX	chr6:32048890-32049469	SK-N-SH	brain:	n/a	n/a
3	MAX	chr6:32048858-32049426	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr6:32045284-32049523	K562	blood:	n/a	n/a
5	MAZ	chr6:32048386-32049722	IMR90	lung:	n/a	n/a
6	FOSL2	chr6:32048881-32049424	SK-N-SH	brain:	n/a	chr6:32049136-32049143
7	STAT3	chr6:32049006-32049652	MCF10A-Er-Src	breast:	n/a	chr6:32049575-32049583 chr6:32049573-32049584
8	NFIC	chr6:32048739-32049515	SK-N-SH	brain:	n/a	n/a
9	RCOR1	chr6:32048368-32050006	IMR90	lung:	n/a	n/a
10	STAT3	chr6:32049127-32049730	MCF10A-Er-Src	breast:	n/a	chr6:32049575-32049583 chr6:32049573-32049584
11	ZBTB7A	chr6:32049285-32049514	K562	blood:	n/a	n/a
12	NFIC	chr6:32048835-32049466	SK-N-SH	brain:	n/a	n/a
13	JUND	chr6:32048477-32049553	SK-N-SH	brain:	n/a	chr6:32049136-32049143 chr6:32049134-32049145
14	GABPA	chr6:32048862-32049486	K562	blood:	n/a	n/a
15	FOSL2	chr6:32048763-32049519	SK-N-SH	brain:	n/a	chr6:32049136-32049143
16	FOS	chr6:32048961-32049717	MCF10A-Er-Src	breast:	n/a	chr6:32049136-32049143
17	JUN	chr6:32048914-32049548	K562	blood:	n/a	chr6:32049136-32049143

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32049376-32049426	AG09309	skin:	n/a
2	chr6:32049373-32049423	NT2-D1	testis:	n/a
3	chr6:32049376-32049426	HCF	heart:	n/a
4	chr6:32049376-32049426	AoSMC	blood vessel:	n/a
5	chr6:32049376-32049426	NB4	blood:	n/a
6	chr6:32049376-32049426	U87	brain:	n/a
7	chr6:32049376-32049426	HRE	kidney:	n/a
8	chr6:32049373-32049423	HPAEpiC	pulmonary alveolar:	n/a
9	chr6:32049376-32049426	SK-N-MC	brain:	n/a
10	chr6:32049373-32049423	HCT-116	colon:	n/a
11	chr6:32049373-32049423	SK-N-MC	brain:	n/a
12	chr6:32049376-32049426	NT2-D1	testis:	n/a
13	chr6:32049376-32049426	BE2_C	brain:	n/a
14	chr6:32049373-32049423	A549	lung:	n/a
15	chr6:32049376-32049426	SKMC	muscle:	n/a
16	chr6:32049373-32049423	ECC-1	luminal epithelium:	n/a
17	chr6:32049373-32049423	HRE	kidney:	n/a
18	chr6:32049376-32049426	HUVEC	blood vessel:	n/a
19	chr6:32049373-32049423	HCF	heart:	n/a
20	chr6:32049373-32049423	HRCEpiC	kidney:	n/a
21	chr6:32049376-32049426	HepG2	liver:	n/a
22	chr6:32049373-32049423	AoSMC	blood vessel:	n/a
23	chr6:32049376-32049426	GM12891	blood:	n/a
24	chr6:32049373-32049423	HCPEpiC	choroid plexus:	n/a
25	chr6:32049373-32049423	Hepatocyte	liver:	n/a
26	chr6:32049373-32049423	IMR90	lung:	fetal
27	chr6:32049376-32049426	HNPCEpiC	eye:	n/a
28	chr6:32049373-32049423	HepG2	liver:	n/a
29	chr6:32049376-32049426	AG04450	lung:	fetal
30	chr6:32049373-32049423	ProgFib	skin:	n/a
31	chr6:32049373-32049423	AG04449	skin:	fetal
32	chr6:32049373-32049423	RPTEC	kidney:	n/a
33	chr6:32049373-32049423	HAEpiC	amniotic membrane:	n/a
34	chr6:32049376-32049426	NHBE	bronchial:	n/a
35	chr6:32049376-32049426	Jurkat	blood:	n/a
36	chr6:32049376-32049426	ProgFib	skin:	n/a
37	chr6:32049373-32049423	GM12878	blood:	n/a
38	chr6:32049373-32049423	BJ	skin:	n/a
39	chr6:32049376-32049426	HEEpiC	esophagus:	n/a
40	chr6:32049373-32049423	Caco-2	colon:	n/a
41	chr6:32049376-32049426	HEK293	kidney:	embryo
42	chr6:32049376-32049426	HRCEpiC	kidney:	n/a
43	chr6:32049373-32049423	HL-60	blood:	n/a
44	chr6:32049376-32049426	BJ	skin:	n/a
45	chr6:32049376-32049426	HIPEpiC	eye:	n/a
46	chr6:32049373-32049423	NH-A	brain:	n/a
47	chr6:32049376-32049426	RPTEC	kidney:	n/a
48	chr6:32049373-32049423	AG09309	skin:	n/a
49	chr6:32049376-32049426	IMR90	lung:	fetal
50	chr6:32049373-32049423	MCF-7	breast:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31761964..31763580-chr6:32048998..32050793,2	MCF-7	breast:
2	chr6:32048603..32050126-chr6:32100520..32102829,2	MCF-7	breast:
3	chr6:32036667..32039321-chr6:32047950..32049934,3	MCF-7	breast:
4	chr6:32047523..32050456-chr6:32072355..32074690,2	MCF-7	breast:
5	chr6:32049311..32051554-chr6:32056762..32058610,2	K562	blood:
6	chr6:32043068..32047294-chr6:32047999..32051583,6	MCF-7	breast:

No data

Variant related genes	Relation type
RNA5SP206	TF binding region
RNA5SP206	CpG island
ENSG00000252512	Chromatin interaction
ENSG00000204394	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12153855	0.91[ASN][1000 genomes]
rs12195671	0.81[ASN][1000 genomes]
rs12196385	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198173	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213851	0.87[ASN][1000 genomes]
rs12215107	0.87[ASN][1000 genomes]
rs13194586	0.81[ASN][1000 genomes]
rs13199524	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211318	0.87[ASN][1000 genomes]
rs17207867	0.82[ASN][1000 genomes]
rs204884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28732174	0.87[ASN][1000 genomes]
rs28732176	0.87[ASN][1000 genomes]
rs3096689	0.87[ASN][1000 genomes]
rs3096697	0.87[ASN][1000 genomes]
rs3130277	0.91[ASN][1000 genomes]
rs3130281	0.87[ASN][1000 genomes]
rs3130284	0.87[ASN][1000 genomes]
rs3130347	0.87[ASN][1000 genomes]
rs3130348	0.87[ASN][1000 genomes]
rs3131297	0.87[ASN][1000 genomes]
rs3132965	0.87[ASN][1000 genomes]
rs3134608	0.87[ASN][1000 genomes]
rs3134941	0.95[ASN][1000 genomes]
rs3134944	0.87[ASN][1000 genomes]
rs3134945	0.87[ASN][1000 genomes]
rs3134946	0.87[ASN][1000 genomes]
rs3134947	0.87[ASN][1000 genomes]
rs3134951	0.87[ASN][1000 genomes]
rs3134952	0.87[ASN][1000 genomes]
rs34214527	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34241101	0.82[ASN][1000 genomes]
rs35152141	0.81[ASN][1000 genomes]
rs35337578	0.82[ASN][1000 genomes]
rs6904786	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	nsv427751	chr6:31871512-32092843	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
8	nsv428141	chr6:31871512-32092843	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
9	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
10	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv884513	chr6:31922575-32066025	Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
12	nsv884517	chr6:31931673-32057627	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
14	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
16	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
17	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
22	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
23	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
24	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
26	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
27	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
28	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
29	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
30	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
31	esv2829854	chr6:31964246-32053129	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
32	esv1797620	chr6:31965272-32065324	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
33	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
34	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
35	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
36	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
37	nsv884676	chr6:31994872-32069806	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
38	nsv884678	chr6:31996185-32057627	Genic enhancers Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
39	nsv538191	chr6:32007556-32052567	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
40	nsv538192	chr6:32007556-32056226	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
41	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
42	nsv884686	chr6:32018888-32066025	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
43	nsv932200	chr6:32019146-32059610	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
44	nsv602101	chr6:32019769-32052983	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
45	nsv884689	chr6:32030284-32064265	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
46	nsv884690	chr6:32043757-32066025	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
48	nsv884691	chr6:32044180-32066025	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv1020992	chr6:32044834-32073778	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	nsv884692	chr6:32044851-32064265	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12211410	HLA-DQA1	cis	cerebellum	SCAN
rs12211410	RPL10A	cis	parietal	SCAN
rs12211410	HLA-DRB6	cis	Thyroid	GTEx
rs12211410	HCP5	cis	lymphoblastoid	seeQTL
rs12211410	ZNF323	cis	cerebellum	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32015200-32052600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:32016400-32050000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:32016600-32050600	Weak transcription	Pancreas	Pancrea
4	chr6:32038200-32055000	Weak transcription	Left Ventricle	heart
5	chr6:32038400-32051400	Weak transcription	Right Ventricle	heart
6	chr6:32041400-32054200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:32044000-32053400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:32044800-32049800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:32045000-32050000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:32045200-32053600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:32046400-32050200	Strong transcription	Lung	lung
12	chr6:32046600-32050000	Enhancers	Placenta	Placenta
13	chr6:32046600-32050000	Enhancers	Hela-S3	cervix
14	chr6:32046600-32050400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:32046600-32053000	Strong transcription	Fetal Intestine Small	intestine
16	chr6:32046800-32054200	Genic enhancers	Fetal Muscle Trunk	muscle
17	chr6:32047000-32049600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:32047000-32050800	Genic enhancers	Placenta Amnion	Placenta Amnion
19	chr6:32047400-32050400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:32047400-32051400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:32047600-32050000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:32047600-32050800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:32048000-32050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:32048200-32049600	Strong transcription	Spleen	Spleen
25	chr6:32048200-32050400	Genic enhancers	Stomach Smooth Muscle	stomach
26	chr6:32048200-32052200	Genic enhancers	Fetal Muscle Leg	muscle
27	chr6:32048400-32049600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:32048400-32050400	Genic enhancers	NHLF	lung
29	chr6:32048400-32050800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:32048600-32049800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:32048600-32049800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:32048600-32050000	Enhancers	HSMM	muscle
33	chr6:32048600-32050200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:32048600-32050800	Genic enhancers	Ovary	ovary
35	chr6:32048800-32049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:32048800-32050000	Genic enhancers	Fetal Stomach	stomach
37	chr6:32048800-32050000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr6:32048800-32050400	Enhancers	Colonic Mucosa	Colon
39	chr6:32048800-32050800	Enhancers	Right Atrium	heart
40	chr6:32048800-32051200	Enhancers	HSMMtube	muscle
41	chr6:32048800-32052400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr6:32049000-32049600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:32049000-32049600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:32049000-32049600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:32049000-32050000	Weak transcription	Adipose Nuclei	Adipose
46	chr6:32049000-32050000	Enhancers	Colon Smooth Muscle	Colon
47	chr6:32049000-32050200	Weak transcription	Brain Anterior Caudate	brain
48	chr6:32049000-32050200	Enhancers	NHDF-Ad	bronchial
49	chr6:32049000-32050800	Enhancers	Osteobl	bone
50	chr6:32049000-32052600	Weak transcription	Brain Hippocampus Middle	brain

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