Variant report

Variant	rs3096697
Chromosome Location	chr6:32134510-32134511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:122)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr6:32134501-32136344	K562	blood:	n/a	n/a
2	CTCF	chr6:32134500-32134650	MCF-7	breast:	n/a	n/a
3	POLR2A	chr6:32133495-32134514	HepG2	liver:	n/a	n/a
4	POLR2A	chr6:32134461-32137408	K562	blood:	n/a	n/a
5	POLR2A	chr6:32132975-32138533	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:32134196-32134574	HepG2	liver:	n/a	n/a
7	FOSL2	chr6:32134451-32134890	HepG2	liver:	n/a	n/a
8	POLR2A	chr6:32133813-32135083	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr6:32133778-32137447	K562	blood:	n/a	n/a
10	RAD21	chr6:32134467-32135015	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr6:32133396-32138007	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr6:32134188-32134819	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr6:32134179-32134885	K562	blood:	n/a	n/a
14	POLR2A	chr6:32133662-32135045	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr6:32133758-32137955	K562	blood:	n/a	n/a
16	POLR2A	chr6:32134332-32135005	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr6:32134034-32137409	K562	blood:	n/a	n/a
18	POLR2A	chr6:32133456-32138776	K562	blood:	n/a	n/a
19	POLR2A	chr6:32134144-32134531	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:32133640-32137544	K562	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32134461-32134511	HepG2	liver:	n/a
2	chr6:32134461-32134511	SKMC	muscle:	n/a
3	chr6:32134490-32134540	Caco-2	colon:	n/a
4	chr6:32134490-32134540	CMK	blood:	n/a
5	chr6:32134461-32134511	Jurkat	blood:	n/a
6	chr6:32134461-32134511	HCPEpiC	choroid plexus:	n/a
7	chr6:32134490-32134540	ECC-1	luminal epithelium:	n/a
8	chr6:32134490-32134540	AG09319	gingival:	n/a
9	chr6:32134461-32134511	K562	blood:	n/a
10	chr6:32134490-32134540	SK-N-SH_RA	brain:	n/a
11	chr6:32134490-32134540	BJ	skin:	n/a
12	chr6:32134490-32134540	HEK293	kidney:	embryo
13	chr6:32134461-32134511	AG04450	lung:	fetal
14	chr6:32134461-32134511	SK-N-MC	brain:	n/a
15	chr6:32134490-32134540	NH-A	brain:	n/a
16	chr6:32134490-32134540	HepG2	liver:	n/a
17	chr6:32134461-32134511	NT2-D1	testis:	n/a
18	chr6:32134490-32134540	AG04449	skin:	fetal
19	chr6:32134461-32134511	SK-N-SH_RA	brain:	n/a
20	chr6:32134490-32134540	NT2-D1	testis:	n/a
21	chr6:32134490-32134540	PrEC	prostate:	n/a
22	chr6:32134490-32134540	BE2_C	brain:	n/a
23	chr6:32134461-32134511	ECC-1	luminal epithelium:	n/a
24	chr6:32134490-32134540	GM12892	blood:	n/a
25	chr6:32134461-32134511	HPAEpiC	pulmonary alveolar:	n/a
26	chr6:32134490-32134540	Hela-S3	cervix:	n/a
27	chr6:32134490-32134540	GM12891	blood:	n/a
28	chr6:32134490-32134540	IMR90	lung:	fetal
29	chr6:32134461-32134511	GM12878	blood:	n/a
30	chr6:32134490-32134540	HRCEpiC	kidney:	n/a
31	chr6:32134461-32134511	NH-A	brain:	n/a
32	chr6:32134490-32134540	HUVEC	blood vessel:	n/a
33	chr6:32134490-32134540	PANC-1	pancreas:	n/a
34	chr6:32134490-32134540	HRE	kidney:	n/a
35	chr6:32134490-32134540	HEEpiC	esophagus:	n/a
36	chr6:32134461-32134511	NHBE	bronchial:	n/a
37	chr6:32134490-32134540	PFSK-1	brain:	n/a
38	chr6:32134461-32134511	HUVEC	blood vessel:	n/a
39	chr6:32134461-32134511	U87	brain:	n/a
40	chr6:32134490-32134540	A549	lung:	n/a
41	chr6:32134461-32134511	HMEC	breast:	n/a
42	chr6:32134461-32134511	HL-60	blood:	n/a
43	chr6:32134490-32134540	NHBE	bronchial:	n/a
44	chr6:32134461-32134511	AG09309	skin:	n/a
45	chr6:32134490-32134540	ProgFib	skin:	n/a
46	chr6:32134461-32134511	ovcar-3	ovarian:	n/a
47	chr6:32134461-32134511	Caco-2	colon:	n/a
48	chr6:32134461-32134511	SAEC	small airway:	n/a
49	chr6:32134490-32134540	Hepatocyte	liver:	n/a
50	chr6:32134461-32134511	CMK	blood:	n/a

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32086685..32087271-chr6:32134236..32135051,2	K562	blood:
2	chr6:32122184..32124281-chr6:32133755..32136302,3	MCF-7	breast:
3	chr6:32083674..32086616-chr6:32133878..32135466,2	MCF-7	breast:
4	chr6:32116953..32128256-chr6:32128373..32148325,54	K562	blood:
5	chr6:32097633..32099354-chr6:32132792..32134647,2	MCF-7	breast:
6	chr6:32095438..32099354-chr6:32131775..32137451,7	K562	blood:
7	chr6:32119715..32123835-chr6:32132075..32139187,7	MCF-7	breast:
8	chr6:32133333..32138602-chr6:32161544..32165617,8	K562	blood:
9	chr6:32134251..32137213-chr6:32156487..32158678,3	MCF-7	breast:

No data

Variant related genes	Relation type
EGFL8	TF binding region
EGFL8	CpG island
ENSG00000258388	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000204304	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000221988	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1062070	0.81[EUR][1000 genomes]
rs12153855	0.96[ASN][1000 genomes]
rs12196385	0.87[ASN][1000 genomes]
rs12198173	0.87[ASN][1000 genomes]
rs12211410	0.87[ASN][1000 genomes]
rs12213851	1.00[ASN][1000 genomes]
rs12215107	1.00[ASN][1000 genomes]
rs13199524	0.87[ASN][1000 genomes]
rs13211318	1.00[ASN][1000 genomes]
rs1800625	0.81[EUR][1000 genomes]
rs204884	0.87[ASN][1000 genomes]
rs2077580	0.87[ASN][1000 genomes]
rs2395099	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28732174	1.00[ASN][1000 genomes]
rs28732176	1.00[ASN][1000 genomes]
rs3096689	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130277	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130347	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130349	0.81[EUR][1000 genomes]
rs3131297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131300	0.82[EUR][1000 genomes]
rs3132965	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134606	0.82[EUR][1000 genomes]
rs3134608	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134940	0.81[EUR][1000 genomes]
rs3134941	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134951	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134952	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34214527	0.83[ASN][1000 genomes]
rs6904786	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv884706	chr6:32116313-32146492	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
37	nsv884707	chr6:32132233-32146492	Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Idiopathic membranous nephropathy	21323541	GWAS catalog

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3096697	HLA-DQB1	Cis_1M	lymphoblastoid	RTeQTL
rs3096697	RPL10A	cis	parietal	SCAN
rs3096697	HLA-DQA1	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32123200-32135000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:32123200-32136200	Weak transcription	GM12878-XiMat	blood
3	chr6:32123200-32136400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:32123200-32142200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:32123200-32142200	Weak transcription	Small Intestine	intestine
6	chr6:32123200-32142600	Weak transcription	Psoas Muscle	Psoas
7	chr6:32123200-32142600	Weak transcription	HUVEC	blood vessel
8	chr6:32123400-32135000	Weak transcription	Right Atrium	heart
9	chr6:32123400-32135600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:32123600-32135000	Weak transcription	Fetal Heart	heart
11	chr6:32123600-32136000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:32123600-32136600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:32123600-32137200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:32123600-32139400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:32123600-32139800	Strong transcription	Fetal Stomach	stomach
16	chr6:32123600-32140600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:32123800-32134600	Weak transcription	Stomach Mucosa	stomach
18	chr6:32123800-32136200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:32123800-32140600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:32123800-32140600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr6:32126000-32140400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:32126200-32135600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:32126200-32136200	Weak transcription	HSMMtube	muscle
24	chr6:32126400-32136400	Weak transcription	HSMM	muscle
25	chr6:32126400-32137000	Weak transcription	A549	lung
26	chr6:32126400-32138600	Weak transcription	Fetal Brain Male	brain
27	chr6:32126600-32137600	Weak transcription	NHDF-Ad	bronchial
28	chr6:32126600-32140800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:32126600-32142600	Weak transcription	Fetal Kidney	kidney
30	chr6:32126800-32134600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:32126800-32134600	Weak transcription	Aorta	Aorta
32	chr6:32126800-32134800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:32126800-32135000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:32126800-32135200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:32126800-32136200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:32126800-32136400	Weak transcription	NH-A	brain
37	chr6:32127000-32135200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:32127000-32135400	Weak transcription	HMEC	breast
39	chr6:32127000-32140600	Weak transcription	Hela-S3	cervix
40	chr6:32127600-32135600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:32129600-32139200	Strong transcription	Ovary	ovary
42	chr6:32129600-32139400	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:32129800-32139400	Strong transcription	Fetal Brain Female	brain
44	chr6:32130000-32138000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:32130000-32139800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:32130000-32140000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:32130200-32139400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:32130200-32139400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:32130400-32134800	Strong transcription	Fetal Intestine Large	intestine
50	chr6:32130400-32139400	Strong transcription	Liver	Liver

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