Variant report

Variant	rs3134947
Chromosome Location	chr6:32145205-32145206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr6:32145087-32146437	MCF-7	breast:	n/a	chr6:32145760-32145771 chr6:32145757-32145771 chr6:32145760-32145769
2	CREB1	chr6:32144751-32146932	HepG2	liver:	n/a	n/a
3	YY1	chr6:32145196-32146394	SK-N-SH_RA	brain:	n/a	chr6:32145490-32145498 chr6:32145487-32145509 chr6:32145484-32145504 chr6:32145671-32145683
4	GABPA	chr6:32145022-32145687	A549	lung:	n/a	n/a
5	CREB1	chr6:32143138-32146895	HepG2	liver:	n/a	n/a
6	UBTF	chr6:32144786-32146120	K562	blood:	n/a	n/a
7	TBP	chr6:32144739-32146685	K562	blood:	n/a	n/a
8	E2F6	chr6:32144908-32146810	K562	blood:	n/a	chr6:32145761-32145770 chr6:32146093-32146105 chr6:32146093-32146102 chr6:32145818-32145829 chr6:32146094-32146101 chr6:32146444-32146456 chr6:32146094-32146101 chr6:32145558-32145567 chr6:32146094-32146101
9	MYC	chr6:32144659-32147055	K562	blood:	n/a	chr6:32145674-32145683 chr6:32146438-32146448
10	POLR2A	chr6:32144820-32146774	ECC-1	luminal epithelium:	n/a	n/a
11	TAF1	chr6:32144795-32146372	H1-hESC	embryonic stem cell:	n/a	n/a
12	CREB1	chr6:32144982-32146303	H1-hESC	embryonic stem cell:	n/a	n/a
13	TBL1XR1	chr6:32144702-32146714	K562	blood:	n/a	n/a
14	SP2	chr6:32145079-32146499	HepG2	liver:	n/a	chr6:32146141-32146164 chr6:32145159-32145168
15	CTCF	chr6:32145097-32145644	K562	blood:	n/a	n/a
16	MAFK	chr6:32144675-32146276	Hela-S3	cervix:	n/a	chr6:32145583-32145598
17	CHD2	chr6:32144718-32146700	K562	blood:	n/a	chr6:32146668-32146678 chr6:32146447-32146457
18	ZNF263	chr6:32144521-32146174	HEK293-T-REx	kidney:	n/a	chr6:32144982-32145003
19	POLR2A	chr6:32142951-32146868	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr6:32144696-32146750	H1-hESC	embryonic stem cell:	n/a	n/a
21	TCF7L2	chr6:32144804-32146202	Hela-S3	cervix:	n/a	chr6:32145633-32145647
22	YY1	chr6:32145194-32146076	H1-hESC	embryonic stem cell:	n/a	chr6:32145490-32145498 chr6:32145487-32145509 chr6:32145484-32145504 chr6:32145671-32145683
23	MYC	chr6:32144404-32147195	K562	blood:	n/a	chr6:32145674-32145683 chr6:32146438-32146448
24	POLR2A	chr6:32142979-32146739	Raji	blood:	n/a	n/a
25	NRF1	chr6:32145006-32146228	GM12878	blood:	n/a	chr6:32145760-32145771 chr6:32145757-32145771 chr6:32145759-32145770 chr6:32145760-32145769
26	HCFC1	chr6:32144809-32146829	K562	blood:	n/a	n/a
27	YY1	chr6:32145008-32146300	SK-N-SH	brain:	n/a	chr6:32145490-32145498 chr6:32145487-32145509 chr6:32145484-32145504 chr6:32145671-32145683
28	MXI1	chr6:32144773-32146804	Hela-S3	cervix:	n/a	chr6:32145668-32145683 chr6:32145670-32145685
29	ARID3A	chr6:32144901-32146811	HepG2	liver:	n/a	n/a
30	TCF7L2	chr6:32144819-32146216	HCT-116	colon:	n/a	chr6:32145633-32145647
31	JUND	chr6:32143693-32146828	K562	blood:	n/a	chr6:32145560-32145569 chr6:32146443-32146452
32	POLR2A	chr6:32144738-32146537	Hela-S3	cervix:	n/a	n/a
33	POLR2A	chr6:32140323-32146931	SK-N-MC	brain:	n/a	n/a
34	POLR2A	chr6:32144961-32145632	GM12891	blood:	n/a	n/a
35	POLR2A	chr6:32145113-32145823	GM12892	blood:	n/a	n/a
36	POLR2A	chr6:32145060-32146595	GM19193	blood:	n/a	n/a
37	EP300	chr6:32145110-32146362	GM12878	blood:	n/a	n/a
38	SP1	chr6:32144813-32146520	A549	lung:	n/a	chr6:32145158-32145165 chr6:32145161-32145170 chr6:32146444-32146453 chr6:32145557-32145578 chr6:32146095-32146109 chr6:32146440-32146454 chr6:32146443-32146455 chr6:32146443-32146455 chr6:32145886-32145893
39	ZNF143	chr6:32144852-32146252	K562	blood:	n/a	n/a
40	NRF1	chr6:32144489-32146405	SK-N-SH	brain:	n/a	chr6:32145760-32145771 chr6:32145757-32145771 chr6:32145759-32145770 chr6:32145760-32145769
41	POLR2A	chr6:32144817-32147002	K562	blood:	n/a	n/a
42	POLR2A	chr6:32145171-32145617	A549	lung:	n/a	n/a
43	MYC	chr6:32144946-32146820	NB4	blood:	n/a	chr6:32145674-32145683 chr6:32146438-32146448
44	MTA3	chr6:32143070-32147309	GM12878	blood:	n/a	n/a
45	FOXA1	chr6:32145047-32146399	HepG2	liver:	n/a	n/a
46	POLR2A	chr6:32144873-32146556	HCT-116	colon:	n/a	n/a
47	REST	chr6:32144776-32145581	A549	lung:	n/a	n/a
48	POLR2A	chr6:32142702-32146924	PBDE	blood:	n/a	n/a
49	REST	chr6:32144628-32146128	H1-neurons	neurons:	n/a	n/a
50	POLR2A	chr6:32144880-32149546	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32145165-32145215	HEK293	kidney:	embryo
2	chr6:32145165-32145215	HCM	heart:	n/a
3	chr6:32145165-32145215	A549	lung:	n/a
4	chr6:32145165-32145215	BE2_C	brain:	n/a
5	chr6:32145165-32145215	CMK	blood:	n/a
6	chr6:32145165-32145215	HAEpiC	amniotic membrane:	n/a
7	chr6:32145165-32145215	NT2-D1	testis:	n/a
8	chr6:32145165-32145215	AG04449	skin:	fetal
9	chr6:32145165-32145215	MCF-7	breast:	n/a
10	chr6:32145165-32145215	SK-N-SH	brain:	n/a
11	chr6:32145165-32145215	ovcar-3	ovarian:	n/a
12	chr6:32145165-32145215	GM06990	blood:	n/a
13	chr6:32145165-32145215	SK-N-SH_RA	brain:	n/a
14	chr6:32145165-32145215	Caco-2	colon:	n/a
15	chr6:32145165-32145215	IMR90	lung:	fetal
16	chr6:32145165-32145215	HPAEpiC	pulmonary alveolar:	n/a
17	chr6:32145165-32145215	HEEpiC	esophagus:	n/a
18	chr6:32145165-32145215	HL-60	blood:	n/a
19	chr6:32145165-32145215	Jurkat	blood:	n/a
20	chr6:32145165-32145215	NB4	blood:	n/a
21	chr6:32145165-32145215	AG04450	lung:	fetal
22	chr6:32145165-32145215	PFSK-1	brain:	n/a
23	chr6:32145165-32145215	HRCEpiC	kidney:	n/a
24	chr6:32145165-32145215	SK-N-MC	brain:	n/a
25	chr6:32145165-32145215	Hela-S3	cervix:	n/a
26	chr6:32145165-32145215	GM12892	blood:	n/a
27	chr6:32145165-32145215	AoSMC	blood vessel:	n/a
28	chr6:32145165-32145215	GM12891	blood:	n/a
29	chr6:32145165-32145215	NHBE	bronchial:	n/a
30	chr6:32145165-32145215	NH-A	brain:	n/a
31	chr6:32145165-32145215	PrEC	prostate:	n/a
32	chr6:32145165-32145215	HRE	kidney:	n/a
33	chr6:32145165-32145215	RPTEC	kidney:	n/a
34	chr6:32145165-32145215	AG10803	skin:	n/a
35	chr6:32145165-32145215	ECC-1	luminal epithelium:	n/a
36	chr6:32145165-32145215	HUVEC	blood vessel:	n/a
37	chr6:32145165-32145215	HepG2	liver:	n/a
38	chr6:32145165-32145215	HRPEpiC	eye:	n/a
39	chr6:32145165-32145215	Hepatocyte	liver:	n/a
40	chr6:32145165-32145215	MCF10A-Er-Src	breast:	n/a
41	chr6:32145165-32145215	HCF	heart:	n/a
42	chr6:32145165-32145215	T-47D	breast:	n/a
43	chr6:32145165-32145215	GM19239	blood:	n/a
44	chr6:32145165-32145215	PANC-1	pancreas:	n/a
45	chr6:32145165-32145215	HMEC	breast:	n/a
46	chr6:32145165-32145215	K562	blood:	n/a
47	chr6:32145165-32145215	BJ	skin:	n/a
48	chr6:32145165-32145215	AG09309	skin:	n/a
49	chr6:32145165-32145215	SKMC	muscle:	n/a
50	chr6:32145165-32145215	H1-hESC	embryonic stem cell:	embryo

No.	Distal block	Cell Line	Cell type
1	chr6:32124310..32127187-chr6:32144126..32145927,3	MCF-7	breast:
2	chr6:32086106..32088129-chr6:32144055..32145773,2	MCF-7	breast:
3	chr16:23652493..23653132-chr6:32144901..32145414,2	Hela-S3	cervix:
4	chr6:32119236..32123483-chr6:32143856..32148114,6	MCF-7	breast:
5	chr6:32116953..32128256-chr6:32128373..32148325,54	K562	blood:
6	chr6:32096431..32099984-chr6:32142713..32147644,5	MCF-7	breast:
7	chr3:183353059..183353568-chr6:32145156..32145724,2	Hela-S3	cervix:
8	chr6:32144165..32146051-chr6:32937722..32940120,2	MCF-7	breast:
9	chr6:32093794..32098047-chr6:32142723..32149394,11	MCF-7	breast:
10	chr6:32117996..32123374-chr6:32143500..32146983,4	MCF-7	breast:
11	chr6:32096229..32099751-chr6:32142407..32148684,10	K562	blood:
12	chr6:31939077..31941209-chr6:32144185..32146901,2	MCF-7	breast:
13	chr6:32093550..32095637-chr6:32144069..32145904,2	MCF-7	breast:
14	chr1:9352923..9353490-chr6:32144929..32145668,2	Hela-S3	cervix:
15	chr6:32092992..32099796-chr6:32141629..32147303,15	K562	blood:
16	chr6:32142678..32147635-chr6:32160639..32166698,10	MCF-7	breast:
17	chr6:32088117..32090245-chr6:32144940..32147612,2	K562	blood:
18	chr6:31762749..31764673-chr6:32143789..32146313,2	K562	blood:

Variant related genes	Relation type
RNF5	TF binding region
AGPAT1	TF binding region
RNF5	CpG island
AGPAT1	CpG island
ENSG00000204348	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000171621	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000166847	Chromatin interaction
ENSG00000114796	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000083093	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000213676	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1062070	0.81[EUR][1000 genomes]
rs12153855	0.96[ASN][1000 genomes]
rs12196385	0.87[ASN][1000 genomes]
rs12198173	0.87[ASN][1000 genomes]
rs12211410	0.87[ASN][1000 genomes]
rs12213851	1.00[ASN][1000 genomes]
rs12215107	1.00[ASN][1000 genomes]
rs13199524	0.87[ASN][1000 genomes]
rs13211318	1.00[ASN][1000 genomes]
rs1800625	0.81[EUR][1000 genomes]
rs204884	0.87[ASN][1000 genomes]
rs2077580	0.87[ASN][1000 genomes]
rs2395099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28732174	1.00[ASN][1000 genomes]
rs28732176	1.00[ASN][1000 genomes]
rs3096689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3096697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130277	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130284	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130347	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130348	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130349	0.81[EUR][1000 genomes]
rs3131297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132965	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134606	0.81[EUR][1000 genomes]
rs3134608	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134940	0.81[EUR][1000 genomes]
rs3134941	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134951	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134952	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34214527	0.83[ASN][1000 genomes]
rs6904786	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv884706	chr6:32116313-32146492	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
37	nsv884707	chr6:32132233-32146492	Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
38	esv11944	chr6:32145042-32148107	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3134947	RPL10A	cis	parietal	SCAN
rs3134947	HLA-DQB1	Cis_1M	lymphoblastoid	RTeQTL
rs3134947	HLA-DQA1	cis	lymphoblastoid	GTEx
rs3134947	HLA-DQA1	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32142600-32145600	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr6:32142800-32147000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:32143000-32145400	Flanking Active TSS	Colonic Mucosa	Colon
4	chr6:32143000-32145600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:32143000-32145600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr6:32143000-32145600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr6:32143000-32147000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:32143000-32147000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:32143000-32147000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:32143200-32145600	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr6:32143200-32145600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:32143200-32146600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:32143200-32146600	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr6:32143200-32146600	Active TSS	Right Atrium	heart
15	chr6:32143200-32146800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:32143200-32146800	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:32143200-32147000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:32143200-32147000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:32143200-32147000	Active TSS	Ovary	ovary
20	chr6:32143200-32147200	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:32143200-32147200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr6:32143200-32147200	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:32143200-32147200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:32143200-32147200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:32143400-32145400	Active TSS	Aorta	Aorta
26	chr6:32143400-32146600	Active TSS	Left Ventricle	heart
27	chr6:32143400-32146800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:32143600-32146600	Active TSS	Psoas Muscle	Psoas
29	chr6:32143600-32146800	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr6:32144000-32145400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:32144000-32145400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:32144000-32145400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:32144000-32145400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:32144000-32145400	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr6:32144000-32145400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr6:32144000-32145400	Flanking Active TSS	Fetal Intestine Large	intestine
37	chr6:32144000-32145400	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr6:32144000-32145400	Flanking Active TSS	Fetal Lung	lung
39	chr6:32144000-32145400	Enhancers	Spleen	Spleen
40	chr6:32144000-32145400	Flanking Active TSS	Hela-S3	cervix
41	chr6:32144000-32145400	Flanking Active TSS	HMEC	breast
42	chr6:32144000-32145400	Flanking Active TSS	HSMM	muscle
43	chr6:32144000-32145400	Flanking Active TSS	HSMMtube	muscle
44	chr6:32144000-32145400	Flanking Active TSS	NH-A	brain
45	chr6:32144000-32145400	Flanking Active TSS	NHEK	skin
46	chr6:32144000-32145400	Flanking Active TSS	NHLF	lung
47	chr6:32144000-32145400	Flanking Active TSS	Osteobl	bone
48	chr6:32144000-32145600	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr6:32144000-32145600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr6:32144000-32145600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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