Variant report

Variant	rs34942800
Chromosome Location	chr4:76442052-76442053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76440275..76442057-chr4:76460555..76462360,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7698555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685780	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76442800	Weak transcription	Ovary	ovary
2	chr4:76440400-76448000	Weak transcription	Left Ventricle	heart
3	chr4:76440400-76450000	Weak transcription	Lung	lung
4	chr4:76440400-76453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:76440400-76454800	Weak transcription	Aorta	Aorta
6	chr4:76440400-76455200	Weak transcription	Esophagus	oesophagus
7	chr4:76440400-76456200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:76440400-76456600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:76440400-76458000	Weak transcription	Spleen	Spleen
10	chr4:76440400-76458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
12	chr4:76440400-76473200	Weak transcription	Gastric	stomach
13	chr4:76440600-76442400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:76440600-76442400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:76440600-76442400	Weak transcription	Stomach Mucosa	stomach
16	chr4:76440600-76443800	Weak transcription	Fetal Brain Male	brain
17	chr4:76440600-76444200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:76440600-76451200	Weak transcription	Psoas Muscle	Psoas
19	chr4:76440600-76454800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:76440600-76455400	Weak transcription	Right Ventricle	heart
21	chr4:76440800-76442200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:76440800-76442400	Weak transcription	Brain Substantia Nigra	brain
23	chr4:76440800-76442400	Weak transcription	Fetal Intestine Large	intestine
24	chr4:76440800-76442600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:76440800-76442600	Weak transcription	Adipose Nuclei	Adipose
26	chr4:76440800-76442600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:76440800-76442600	Weak transcription	HSMM	muscle
28	chr4:76440800-76442600	Weak transcription	HSMMtube	muscle
29	chr4:76440800-76442600	Weak transcription	Osteobl	bone
30	chr4:76440800-76442800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:76440800-76442800	Weak transcription	A549	lung
32	chr4:76440800-76442800	Weak transcription	K562	blood
33	chr4:76440800-76443200	Weak transcription	NH-A	brain
34	chr4:76440800-76443400	Weak transcription	NHDF-Ad	bronchial
35	chr4:76440800-76443600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:76440800-76443800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:76440800-76444200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:76440800-76445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr4:76440800-76448600	Weak transcription	Fetal Stomach	stomach
40	chr4:76440800-76450800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:76440800-76451000	Weak transcription	Brain Angular Gyrus	brain
42	chr4:76440800-76451000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr4:76440800-76454800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:76440800-76455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:76440800-76455800	Weak transcription	Thymus	Thymus
46	chr4:76440800-76456000	Weak transcription	Pancreas	Pancrea
47	chr4:76440800-76457400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:76440800-76458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:76441000-76442200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:76441000-76442200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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