Variant report

Variant	rs73827642
Chromosome Location	chr4:76431771-76431772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76430445..76433609-chr4:76438042..76440483,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163743	Chromatin interaction
ENSG00000174796	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7698555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685780	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76392600-76434800	Weak transcription	Gastric	stomach
2	chr4:76395800-76437000	Weak transcription	Aorta	Aorta
3	chr4:76395800-76437000	Weak transcription	Lung	lung
4	chr4:76395800-76437000	Weak transcription	Pancreas	Pancrea
5	chr4:76396200-76437000	Weak transcription	Esophagus	oesophagus
6	chr4:76397800-76437000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:76398200-76434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:76398800-76437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:76399400-76434400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:76400600-76437000	Weak transcription	Spleen	Spleen
11	chr4:76401000-76436200	Weak transcription	Brain Angular Gyrus	brain
12	chr4:76403800-76433600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr4:76405600-76434400	Weak transcription	Fetal Heart	heart
14	chr4:76406000-76436600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:76406600-76438800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:76408000-76436600	Weak transcription	Hela-S3	cervix
17	chr4:76410000-76437200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:76411400-76435400	Weak transcription	Small Intestine	intestine
19	chr4:76415400-76435600	Weak transcription	Brain Substantia Nigra	brain
20	chr4:76415400-76436400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:76416600-76436200	Weak transcription	Brain Anterior Caudate	brain
22	chr4:76416600-76437000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:76417600-76436800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:76421200-76433600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:76421400-76437000	Weak transcription	Stomach Mucosa	stomach
26	chr4:76422400-76433800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr4:76422400-76434800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr4:76422600-76432600	Weak transcription	Colon Smooth Muscle	Colon
29	chr4:76423000-76434400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:76423800-76434400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr4:76423800-76434400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:76424200-76432800	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:76424200-76434400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:76424600-76433800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:76424800-76436200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:76424800-76437000	Weak transcription	Psoas Muscle	Psoas
37	chr4:76424800-76437000	Weak transcription	NHLF	lung
38	chr4:76425000-76434800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:76425000-76435000	Strong transcription	HSMM	muscle
40	chr4:76425000-76435600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:76425000-76437000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:76425000-76438800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:76425200-76432600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:76425200-76434200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:76425200-76434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:76425400-76432800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:76425400-76433400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:76425400-76433600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:76425400-76437000	Weak transcription	Right Ventricle	heart
50	chr4:76425400-76439000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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