Variant report

Variant	rs6840714
Chromosome Location	chr4:76471331-76471332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76469939..76472185-chr4:76479459..76481790,2	MCF-7	breast:
2	chr4:76439531..76442512-chr4:76470832..76473735,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf26-3	chr4:76470242-76471971	NONHSAT096929

Variant related genes	Relation type
ENSG00000163743	Chromatin interaction
ENSG00000174792	Chromatin interaction
ENSG00000174796	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	1.00[EUR][1000 genomes]
rs73827640	1.00[EUR][1000 genomes]
rs73827642	1.00[EUR][1000 genomes]
rs73827644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7674907	1.00[EUR][1000 genomes]
rs7679918	1.00[AMR][1000 genomes]
rs7698555	1.00[EUR][1000 genomes]
rs9685780	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76473200	Weak transcription	Gastric	stomach
2	chr4:76444400-76471800	Weak transcription	Fetal Brain Male	brain
3	chr4:76451600-76474400	Weak transcription	Psoas Muscle	Psoas
4	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:76453200-76473600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:76456000-76473000	Weak transcription	HepG2	liver
7	chr4:76456400-76471600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:76456600-76473200	Weak transcription	Fetal Heart	heart
9	chr4:76456800-76472400	Weak transcription	Brain Anterior Caudate	brain
10	chr4:76456800-76474400	Weak transcription	HSMMtube	muscle
11	chr4:76457000-76471800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:76457000-76474400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:76458200-76472000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:76458200-76472000	Weak transcription	Thymus	Thymus
15	chr4:76458200-76472600	Weak transcription	Pancreas	Pancrea
16	chr4:76458200-76474400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:76458400-76480800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:76458800-76471800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:76458800-76472800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:76458800-76473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:76458800-76473200	Weak transcription	Spleen	Spleen
22	chr4:76458800-76480600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:76458800-76480600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:76459000-76471800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:76459000-76473200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:76459000-76473200	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:76460800-76473200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:76461000-76473200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:76461200-76473200	Weak transcription	Fetal Lung	lung
30	chr4:76461600-76473000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:76461600-76473000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:76462400-76471600	Weak transcription	Fetal Thymus	thymus
33	chr4:76462400-76472000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:76463000-76472200	Weak transcription	Dnd41	blood
35	chr4:76463600-76472000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:76464000-76475800	Weak transcription	Lung	lung
37	chr4:76465600-76472200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:76465800-76473600	Weak transcription	Ovary	ovary
39	chr4:76465800-76480600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:76467000-76473200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr4:76468000-76471800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:76468400-76473200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr4:76468400-76473200	Weak transcription	NHLF	lung
44	chr4:76468400-76473400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr4:76468400-76480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:76469000-76472400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr4:76469200-76480200	Weak transcription	NHEK	skin
48	chr4:76470000-76471400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:76470600-76471400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:76470600-76471400	Enhancers	Placenta Amnion	Placenta Amnion

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