Variant report

Variant	rs7698555
Chromosome Location	chr4:76407157-76407158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6825024	0.86[MKK][hapmap]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs6847623	1.00[MEX][hapmap]
rs6856805	1.00[MEX][hapmap]
rs719524	1.00[EUR][1000 genomes]
rs73827625	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73827626	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73827628	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73827639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76392600-76434800	Weak transcription	Gastric	stomach
2	chr4:76394600-76424600	Weak transcription	Right Ventricle	heart
3	chr4:76395800-76437000	Weak transcription	Aorta	Aorta
4	chr4:76395800-76437000	Weak transcription	Lung	lung
5	chr4:76395800-76437000	Weak transcription	Pancreas	Pancrea
6	chr4:76396200-76424400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:76396200-76437000	Weak transcription	Esophagus	oesophagus
8	chr4:76397200-76414600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:76397800-76437000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:76398200-76415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:76398200-76434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:76398400-76407400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:76398800-76437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:76399400-76434400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:76400600-76437000	Weak transcription	Spleen	Spleen
16	chr4:76400800-76409200	Weak transcription	Thymus	Thymus
17	chr4:76401000-76410800	Weak transcription	HSMMtube	muscle
18	chr4:76401000-76436200	Weak transcription	Brain Angular Gyrus	brain
19	chr4:76401200-76409200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:76401200-76410800	Weak transcription	Stomach Mucosa	stomach
21	chr4:76401200-76411400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:76401800-76412400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:76402000-76411600	Strong transcription	HSMM	muscle
24	chr4:76402000-76412200	Strong transcription	Adipose Nuclei	Adipose
25	chr4:76402000-76418600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:76402200-76409600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr4:76402200-76412200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:76402200-76412200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:76402200-76422000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:76402200-76423000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:76402200-76425800	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr4:76402400-76408200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr4:76402400-76409600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr4:76402400-76409800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:76402400-76411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:76402400-76412000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr4:76402400-76418400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:76402400-76418800	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr4:76402400-76419200	Strong transcription	Liver	Liver
40	chr4:76402400-76425800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:76402600-76407400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:76402600-76411400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:76402600-76411400	Strong transcription	Primary B cells from cord blood	blood
44	chr4:76402600-76423200	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:76402800-76407200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr4:76402800-76411600	Weak transcription	Fetal Intestine Small	intestine
47	chr4:76402800-76417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:76403000-76408000	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr4:76403000-76411000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:76403000-76423800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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