Variant report

Variant	rs6818993
Chromosome Location	chr4:76395155-76395156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827626	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827639	1.00[EUR][1000 genomes]
rs73827640	1.00[EUR][1000 genomes]
rs73827642	1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	1.00[EUR][1000 genomes]
rs7698555	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9685780	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998511	chr4:76184807-76398377	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76391800-76396800	Weak transcription	HSMM	muscle
2	chr4:76392000-76395400	Weak transcription	Primary T cells from cord blood	blood
3	chr4:76392000-76396200	Weak transcription	Primary B cells from cord blood	blood
4	chr4:76392000-76402400	Weak transcription	Liver	Liver
5	chr4:76392600-76434800	Weak transcription	Gastric	stomach
6	chr4:76392800-76403000	Weak transcription	Fetal Brain Female	brain
7	chr4:76394000-76406200	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:76394000-76406600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:76394600-76424600	Weak transcription	Right Ventricle	heart
10	chr4:76394800-76395400	Enhancers	Fetal Heart	heart
11	chr4:76395000-76395800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr4:76395000-76401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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