Variant report

Variant	rs7674907
Chromosome Location	chr4:76444353-76444354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76442203..76444511-chr4:76451481..76453969,2	MCF-7	breast:
2	chr4:76439639..76442911-chr4:76442962..76447777,5	K562	blood:
3	chr4:76443470..76446392-chr4:76452432..76455084,2	K562	blood:

Variant related genes	Relation type
ENSG00000163743	Chromatin interaction
ENSG00000174796	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840584	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7698555	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685780	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76440400-76448000	Weak transcription	Left Ventricle	heart
2	chr4:76440400-76450000	Weak transcription	Lung	lung
3	chr4:76440400-76453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:76440400-76454800	Weak transcription	Aorta	Aorta
5	chr4:76440400-76455200	Weak transcription	Esophagus	oesophagus
6	chr4:76440400-76456200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:76440400-76456600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:76440400-76458000	Weak transcription	Spleen	Spleen
9	chr4:76440400-76458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:76440400-76466400	Weak transcription	Small Intestine	intestine
11	chr4:76440400-76473200	Weak transcription	Gastric	stomach
12	chr4:76440600-76451200	Weak transcription	Psoas Muscle	Psoas
13	chr4:76440600-76454800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:76440600-76455400	Weak transcription	Right Ventricle	heart
15	chr4:76440800-76445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:76440800-76448600	Weak transcription	Fetal Stomach	stomach
17	chr4:76440800-76450800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:76440800-76451000	Weak transcription	Brain Angular Gyrus	brain
19	chr4:76440800-76451000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:76440800-76454800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:76440800-76455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:76440800-76455800	Weak transcription	Thymus	Thymus
23	chr4:76440800-76456000	Weak transcription	Pancreas	Pancrea
24	chr4:76440800-76457400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr4:76440800-76458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:76441000-76451000	Weak transcription	Fetal Brain Female	brain
27	chr4:76441000-76454400	Weak transcription	HUVEC	blood vessel
28	chr4:76441000-76456400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:76441200-76452200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:76441400-76444600	Strong transcription	Liver	Liver
31	chr4:76441400-76444600	Strong transcription	Fetal Muscle Leg	muscle
32	chr4:76441400-76447800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:76441400-76448400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:76441400-76451000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:76441400-76456800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:76441400-76457400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:76441600-76444800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:76441600-76447800	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:76441600-76450000	Weak transcription	NHEK	skin
40	chr4:76441600-76452600	Weak transcription	Fetal Heart	heart
41	chr4:76441600-76454000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:76441600-76456400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:76441600-76457400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:76441600-76457600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:76441600-76458600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr4:76441600-76459200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:76441800-76444600	Strong transcription	Fetal Lung	lung
48	chr4:76441800-76444600	Strong transcription	Fetal Thymus	thymus
49	chr4:76441800-76448000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:76441800-76456800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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