Variant report

Variant	rs6840584
Chromosome Location	chr4:76477257-76477258
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1389442	1.00[EUR][1000 genomes]
rs34942800	1.00[EUR][1000 genomes]
rs56326163	1.00[EUR][1000 genomes]
rs57838127	1.00[EUR][1000 genomes]
rs59253564	1.00[EUR][1000 genomes]
rs6813568	1.00[EUR][1000 genomes]
rs6818993	1.00[EUR][1000 genomes]
rs6840714	1.00[EUR][1000 genomes]
rs719524	1.00[EUR][1000 genomes]
rs73827625	1.00[EUR][1000 genomes]
rs73827626	1.00[EUR][1000 genomes]
rs73827628	1.00[EUR][1000 genomes]
rs73827639	1.00[EUR][1000 genomes]
rs73827640	1.00[EUR][1000 genomes]
rs73827642	1.00[EUR][1000 genomes]
rs73827644	1.00[EUR][1000 genomes]
rs7674907	1.00[EUR][1000 genomes]
rs7698555	1.00[EUR][1000 genomes]
rs9685780	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76452600-76477400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:76458400-76480800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:76458800-76480600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:76458800-76480600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:76465800-76480600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:76468400-76480800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:76469200-76480200	Weak transcription	NHEK	skin
8	chr4:76470600-76480600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:76471200-76480400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:76471800-76480800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:76472400-76480400	Weak transcription	HMEC	breast
12	chr4:76473200-76480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:76473600-76480600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:76474800-76480800	Weak transcription	HSMMtube	muscle
15	chr4:76475000-76480200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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