Variant report
| Variant | rs73827625 |
|---|---|
| Chromosome Location | chr4:76391860-76391861 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1389442 | 1.00[EUR][1000 genomes] |
| rs34942800 | 1.00[EUR][1000 genomes] |
| rs56326163 | 1.00[EUR][1000 genomes] |
| rs57838127 | 1.00[EUR][1000 genomes] |
| rs59253564 | 1.00[EUR][1000 genomes] |
| rs6813568 | 1.00[EUR][1000 genomes] |
| rs6818993 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6840584 | 1.00[EUR][1000 genomes] |
| rs6840714 | 1.00[EUR][1000 genomes] |
| rs719524 | 1.00[EUR][1000 genomes] |
| rs73827626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73827628 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73827639 | 1.00[EUR][1000 genomes] |
| rs73827640 | 1.00[EUR][1000 genomes] |
| rs73827642 | 1.00[EUR][1000 genomes] |
| rs73827644 | 1.00[EUR][1000 genomes] |
| rs7658152 | 1.00[EUR][1000 genomes] |
| rs7674907 | 1.00[EUR][1000 genomes] |
| rs7698555 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9685780 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594687 | chr4:76154064-76502748 | Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv998511 | chr4:76184807-76398377 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv534570 | chr4:76214619-76498362 | ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:76391800-76396800 | Weak transcription | HSMM | muscle |
